 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
DCAR_022336 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
Trihelix |
| Protein Properties |
Length: 326aa MW: 36021.7 Da PI: 10.0356 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_022336 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.5 | 6.4e-17 | 32 | 115 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v L+ea++ ++ + +r+klk+++Weev+k++ +++ ++++qCk+k+e+++kry+ + + ++ s++p+f +l+
DCAR_022336 32 EWSEGAVSSLLEAYETKWVHRNRAKLKGQDWEEVAKFVscrgNSTKSPKTQTQCKNKIESMKKRYRSESTAAEA------SSWPLFPKLD 115
5*************************************66666666778889***************9998886......47*****998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MDTDIKQETT ATNDSQRKLL GGSSNDRIKR DEWSEGAVSS LLEAYETKWV HRNRAKLKGQ 60
DWEEVAKFVS CRGNSTKSPK TQTQCKNKIE SMKKRYRSES TAAEASSWPL FPKLDHLLRG 120
SITTQRAPVL PQPTLFSSGV MVTEPTLLLA SQLPPASPKE PLSLLTPPPL ASPINTGIAA 180
ANSHGSDGAD QVAKADGMDT KVSDHLSDKQ AIDTDSSTPA LCSNKEKTKS ENFTNKTQRK 240
KRRRRGEWEI GSSVRWLAEV VLRTEQARVD AMRDLERMRA ESEAKRGEME LKRTEIIANT 300
QLEIAKIFAN MGKGVDSSLR IGRDG*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 237 | 243 | QRKKRRR |
| 2 | 238 | 244 | RKKRRRR |
| 3 | 239 | 244 | KKRRRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ518870 | 1e-108 | KJ518870.1 Daucus carota subsp. carota clone maj652229 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518871 | 1e-108 | KJ518871.1 Daucus carota subsp. carota clone majA25017 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518874 | 1e-108 | KJ518874.1 Daucus carota subsp. carota clone mar652225 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518875 | 1e-108 | KJ518875.1 Daucus carota subsp. carota clone marA26393 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518876 | 1e-108 | KJ518876.1 Daucus carota subsp. carota clone marA26394 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518877 | 1e-108 | KJ518877.1 Daucus carota subsp. carota clone max652230 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518878 | 1e-108 | KJ518878.1 Daucus carota subsp. carota clone maxA26401 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518891 | 1e-108 | KJ518891.1 Daucus carota subsp. carota clone sca274297 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518893 | 1e-108 | KJ518893.1 Daucus carota subsp. carota clone sca279788 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518894 | 1e-108 | KJ518894.1 Daucus carota subsp. carota clone sca295862 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518895 | 1e-108 | KJ518895.1 Daucus carota subsp. carota clone sca390887 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518897 | 1e-108 | KJ518897.1 Daucus carota subsp. carota clone sca430525 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518898 | 1e-108 | KJ518898.1 Daucus carota subsp. carota clone sca478369 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518899 | 1e-108 | KJ518899.1 Daucus carota subsp. carota clone sca478873 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518900 | 1e-108 | KJ518900.1 Daucus carota subsp. carota clone sca478881 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518901 | 1e-108 | KJ518901.1 Daucus carota subsp. carota clone sca478884 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518902 | 1e-108 | KJ518902.1 Daucus carota subsp. carota clone sca652341 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518904 | 1e-108 | KJ518904.1 Daucus carota subsp. carota clone scaA27397 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518905 | 1e-108 | KJ518905.1 Daucus carota subsp. carota clone scaA30251 anonymous marker DC282 genomic sequence. |
| GenBank | KJ518906 | 1e-108 | KJ518906.1 Daucus carota subsp. carota clone scaA30262 anonymous marker DC282 genomic sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 2e-93 | sequence-specific DNA binding transcription factors |
