PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021547
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 351aa    MW: 39918.5 Da    PI: 5.0286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021547genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-1568109346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E+el++++++  G++ W+ Ia+ ++ gRt++++k++w++
      DCAR_021547  68 NFTPQEEELIINLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 109
                      89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-11564IPR009057Homeodomain-like
PROSITE profilePS500907.468960IPR017877Myb-like domain
SuperFamilySSF466892.23E-2011107IPR009057Homeodomain-like
SMARTSM007170.091362IPR001005SANT/Myb domain
PROSITE profilePS5129423.33561115IPR017930Myb domain
SMARTSM007174.8E-1465113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2365115IPR009057Homeodomain-like
CDDcd001675.10E-1068111No hitNo description
PfamPF002491.1E-1368109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVKPPCYERM NVRKGNWNKD EDVKMIAYAP KQRTNWTDAS KKTGPRKCGK SCKHKCSNHL  60
RPDKKHENFT PQEEELIINL HAAIGSRWSI IAQQLPGRTD NDVKNYWNTK LKKKLSEMGI  120
DHVTHKPFSQ IISDYSSIGA FPNPNARVSY LNRDFTNPSF IQKQEPYSAA QFSNYTSTKS  180
PESFLTNSIG NYANDTQPLD LLTQLQSITL VKQPPNCLTN QIMQPEICNE YASSSSSSSP  240
PEILNEGWVP SSFGWRDFLL EDAIPPQTPV KENLEEVPAQ GLLRQVENDM KQTDTEQLNE  300
YDNDDDMLNS FKSPAPSSSA NNSSFVEAML DEEHDMFLEF PSLLEEPFYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-21141157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257350.10.0PREDICTED: transcription factor MYB35-like isoform X2
TrEMBLA0A164VZZ00.0A0A164VZZ0_DAUCS; Uncharacterized protein
STRINGGorai.010G139300.11e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-51MYB family protein