PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020703

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TALE

Protein Properties

Length: 721aa MW: 78604.2 Da PI: 7.2841

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020703	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	421	458	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + DCAR_020703 421 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 458 554459******************************88 PP
2	BELL	117.9	4.8e-38	284	355	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsak Yt+lAl++iS++FrcLkdai++qi DCAR_020703 284 ERQEIQLKKAKLVNMLDEVEQRYRQYHNQMQIVISWFEQAAGIGSAKTYTALALQTISKQFRCLKDAIMGQI 355 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.7E-64	208	353	IPR006563	POX domain
Pfam	PF07526	6.2E-47	213	352	IPR006563	POX domain
PROSITE profile	PS50071	12.195	399	462	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	402	466	IPR001356	Homeobox domain
CDD	cd00086	1.71E-12	402	463	No hit	No description
SuperFamily	SSF46689	8.13E-17	403	469	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	405	468	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	419	458	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MGTYYHGNSE IQGDGLQTLI LMNPGYNNNN NVGYSDTPQQ QQQQQQSPTG NYMFLNSNST 60 GGNSLGHSTM SHAPPTQQFV GIPLSATASA APQQDGNNHP HHPSMVQSHH DMSGLHGYMP 120 RLQYSLYNPV ELTAARDVTR TPQGLSLSLS SQQHGFGSFG TDRELSSPAL TPGHPPTISP 180 RSGGGGGEDV RPHGGSSSSV SGVSNGVNGM QSVLLSSKYL KAAQELLDEV VNVGKGVKTS 240 DLPVVPTNGN MKNGENSSPV ATGDGLSGGG EGSSKRPVEL TTAERQEIQL KKAKLVNMLD 300 EVEQRYRQYH NQMQIVISWF EQAAGIGSAK TYTALALQTI SKQFRCLKDA IMGQIRAASK 360 SLGEENSLAG GKLEGSRLKF VDNQLRQQRA LQQLGMIQHN AWRPQRGLPE RSVSVLRAWL 420 FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYTE EIKEQEQNGS 480 EDKTSKSEQN EEMASKGKAP QDKSPTENQD NLTRHNSQNT VSASAISTSP TGSNIRNQSG 540 FTLIGSSEME EMTRGSPKKL RSTDMMHSVS GNALYMNMES KPETNNEQMS MKFGNDQRQT 600 RDGFTLMGSP TNYIRGFGSY PMGDIGRYGA DQFTPAPYSG NGVSLTLGLP HGENLSMSGT 660 HQNFLSNQNM QMGRGVDISE ANEFGAIDTP TSSHSATMYE NMNIQNRKRF AAQLLPDFVA 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MGTYYHGNSE IQGDGLQTLI LMNPGYNNNN NVGYSDTPQQ QQQQQQSPTG NYMFLNSNST  60
GGNSLGHSTM SHAPPTQQFV GIPLSATASA APQQDGNNHP HHPSMVQSHH DMSGLHGYMP  120
RLQYSLYNPV ELTAARDVTR TPQGLSLSLS SQQHGFGSFG TDRELSSPAL TPGHPPTISP  180
RSGGGGGEDV RPHGGSSSSV SGVSNGVNGM QSVLLSSKYL KAAQELLDEV VNVGKGVKTS  240
DLPVVPTNGN MKNGENSSPV ATGDGLSGGG EGSSKRPVEL TTAERQEIQL KKAKLVNMLD  300
EVEQRYRQYH NQMQIVISWF EQAAGIGSAK TYTALALQTI SKQFRCLKDA IMGQIRAASK  360
SLGEENSLAG GKLEGSRLKF VDNQLRQQRA LQQLGMIQHN AWRPQRGLPE RSVSVLRAWL  420
FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYTE EIKEQEQNGS  480
EDKTSKSEQN EEMASKGKAP QDKSPTENQD NLTRHNSQNT VSASAISTSP TGSNIRNQSG  540
FTLIGSSEME EMTRGSPKKL RSTDMMHSVS GNALYMNMES KPETNNEQMS MKFGNDQRQT  600
RDGFTLMGSP TNYIRGFGSY PMGDIGRYGA DQFTPAPYSG NGVSLTLGLP HGENLSMSGT  660
HQNFLSNQNM QMGRGVDISE ANEFGAIDTP TSSHSATMYE NMNIQNRKRF AAQLLPDFVA  720
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	408	466	5	63	Homeobox protein Meis2
3k2a_B	4e-16	408	466	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257976.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017257977.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017257978.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-173	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A161ZV97	0.0	A0A161ZV97_DAUCS; Uncharacterized protein
STRING	EMJ05449	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-155	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	DCAR_020703

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]