PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020153
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 353aa    MW: 39166.4 Da    PI: 4.6957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020153genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.46.9e-29148208259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r a+dp ++e++Y+g+H+++
  DCAR_020153 148 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLADDPFTFEVIYRGDHTCT 208
                  7****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26143208IPR003657WRKY domain
SuperFamilySSF1182901.96E-25145209IPR003657WRKY domain
SMARTSM007746.6E-38147209IPR003657WRKY domain
PfamPF031064.1E-26148207IPR003657WRKY domain
PROSITE profilePS5081120.254148210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEIVSLIYN GCRLARDLEV NLPNIANQPE MLWNNCEEII RIFTDTRDRI NAQFGGGSQG  60
EDVGAMQQWL RYTPQIVQQQ EGGSEGAVVA PSEAERWAAG GRGDQLQPVE GAARGATFQR  120
TRRREEDAER RIIRVPAPQI GNTEIPPEDG FTWRKYGQKE ILGSRFPRAY YRCTHQKLYN  180
CPAKKQVQRL ADDPFTFEVI YRGDHTCTVS STAPSMSALP ENTEASRVMF QQAAGTMSSS  240
QLLHSSTTTS VLPGSQNWLS MRTQPAGLDA TNTNNPFVNM HMFSNISGMV ESSSGVAGPS  300
TMRDAGDQYY EPLAEFVDVM FNSGTSSNSN MDHIFSADIE DHKWDSGEDK QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18148207968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257251.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A161ZWF90.0A0A161ZWF9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-46WRKY DNA-binding protein 55