PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019383

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 444aa MW: 45863.1 Da PI: 6.2303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019383	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	244	289	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq DCAR_019383 244 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 289 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.77E-13	237	293	No hit	No description
SuperFamily	SSF47459	1.13E-16	237	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-16	241	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	244	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MQSMNSNMNH NQQNQNNSNF QEEPHHSFDQ TASHDDFLEQ MLNSLPSWPQ SSEQNSHKAS 60 FPWDSSQGNG LMAASFDDQS VMLASKLRQN QISGGGGGGG GGSSASAALS MLQQQLFMAR 120 GLASALQGDD PEGSGLLPLP VSLSNGDDDG DGPFKSVNPG SGDGSVQALF NGFTGSLHAS 180 SQTSNQAQHF HQSQGGNMQS QNYGGGVGGM SQAQGNGGGG GTGGAPAQPR QRVRARRGQA 240 TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL 300 GGAGAVAPMV ADISSEGGGD CVQSTGGGGA SRNGNGSQTA AASSSSNNET MKVTEHQVAK 360 LMEEDMGSAM QYLQGKGLCL MPISLATAIS TSTTTNTRSH HPLLPSTNGA GGPTSPSLSV 420 LSVQSATRGV NGVNNDNTSV SKP*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MQSMNSNMNH NQQNQNNSNF QEEPHHSFDQ TASHDDFLEQ MLNSLPSWPQ SSEQNSHKAS  60
FPWDSSQGNG LMAASFDDQS VMLASKLRQN QISGGGGGGG GGSSASAALS MLQQQLFMAR  120
GLASALQGDD PEGSGLLPLP VSLSNGDDDG DGPFKSVNPG SGDGSVQALF NGFTGSLHAS  180
SQTSNQAQHF HQSQGGNMQS QNYGGGVGGM SQAQGNGGGG GTGGAPAQPR QRVRARRGQA  240
TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  300
GGAGAVAPMV ADISSEGGGD CVQSTGGGGA SRNGNGSQTA AASSSSNNET MKVTEHQVAK  360
LMEEDMGSAM QYLQGKGLCL MPISLATAIS TSTTTNTRSH HPLLPSTNGA GGPTSPSLSV  420
LSVQSATRGV NGVNNDNTSV SKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	102	SGGGGGGGGGS
2	248	253	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	3e-65	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249202.1	0.0	PREDICTED: transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	6e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A164ZMN3	0.0	A0A164ZMN3_DAUCS; Uncharacterized protein
STRING	VIT_11s0037g00040.t01	1e-154	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-48	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	DCAR_019383

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]