PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_015369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 181aa MW: 21197.7 Da PI: 7.1946 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 52 | 92 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P Kl+ +++Le+A+ Y+k L DCAR_015369 52 ARERRHRISERFKILQSLVPGG-----SKLDTVSMLEEAIVYVKFL 92 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.275 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-14 | 48 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.72E-12 | 49 | 96 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-13 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-7 | 52 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MECYNINSSF KYCDNNNEMQ HLEKKKKMKS GKKQACGRKE VKLSTDPQSV AARERRHRIS 60 ERFKILQSLV PGGSKLDTVS MLEEAIVYVK FLKNQLWWLI HYHTQQHQNI NFNYNSNDYH 120 VVLDEQPSTS FNDLPYDDRD PRRISTRDDS GLFLQNASSY DHEMAQILEF QDSWLAETSV 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023919897.1 | 3e-33 | transcription factor LAX PANICLE 1 | ||||
TrEMBL | A0A165ABZ6 | 1e-133 | A0A165ABZ6_DAUCS; Uncharacterized protein | ||||
STRING | XP_010092808.1 | 4e-30 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11714 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01310.1 | 1e-27 | APRATAXIN-like |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_015369 |