PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_014406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35807.1 Da PI: 9.6919 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+++G+ +W++Ia++++ gR++k+c++rw++ DCAR_014406 43 RGHWRPAEDDKLRQLVARYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 88 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59 | 1e-18 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ DCAR_014406 95 RKPFTEEEEERLLAAHRIHGNK-WAHISRLFP-GRTDNAVKNHWHV 138 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.654 | 38 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-29 | 40 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 42 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 43 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 44 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-13 | 46 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.981 | 90 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-16 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 95 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 97 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-7 | 106 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAIIIDFFLI RLFVADLRYL LSDLHYSQTG GGSSADDAPS CPRGHWRPAE DDKLRQLVAR 60 YGPQNWNSIA EKLQGRSGKS CRLRWFNQLD PRINRKPFTE EEEERLLAAH RIHGNKWAHI 120 SRLFPGRTDN AVKNHWHVIM ARKQREQSKL CGKRSCPDLI SAPDHVHRPN NNSSKICCTN 180 THFLEFQNYK KMDSSTSWNF RPSASKDHAG NADRGGVNYS SSNEFFRGSA SSSTPLLHHP 240 YHLSPSVSRG TLYRDFGSRA ISGYKMLHSK HGDQESMNRA MVSLGNNQQV REDESIIQKE 300 IPFIDFLGVE SLNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 39 | 143 | 3 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246496.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | A0A162AA17 | 0.0 | A0A162AA17_DAUCS; Uncharacterized protein | ||||
STRING | VIT_18s0001g15260.t01 | 3e-87 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-61 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_014406 |