PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013734
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 319aa    MW: 37017.7 Da    PI: 8.43
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013734genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51261523128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPtdeelv++yL++kve+k+l++ e ik++diyk++PwdLpk  + ++kewyfF++r +ky+++ r+nr+t+sg+Wkatg d++++s+  +++
  DCAR_013734  26 PGFRFHPTDEELVDFYLRRKVEKKPLSI-ELIKHIDIYKYDPWDLPKGSNVGDKEWYFFCRRGRKYRNSIRPNRVTSSGFWKATGIDRPIYSEsrRDQ 122
                  9***************************.89***************988899****************************************876777 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vglkk+Lv+y+g+a kg+ktdW+mhe+rl
  DCAR_013734 123 CVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152
                  7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.22924187IPR003441NAC domain
SuperFamilySSF1019411.44E-5425187IPR003441NAC domain
PfamPF023656.0E-2626152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNGRRMDITG NRNQGDVEDE DDAPLPGFRF HPTDEELVDF YLRRKVEKKP LSIELIKHID  60
IYKYDPWDLP KGSNVGDKEW YFFCRRGRKY RNSIRPNRVT SSGFWKATGI DRPIYSESRR  120
DQCVGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPPDYQPN KNTSKIIQIN DAFQEAEVWT  180
LCRILKRNTS HKKNLPDWRD QITSSKKKYN PLIDASSKTC SGESDNLQGF SISFQQTPKL  240
IDQHIREEKP VVFPNNHVTD LSHLVMAPVT NSMYQEAPSS VVTSYSNFSS PEMNEFVKYG  300
DWEELRSFVE FAGDQCMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-502619322174NAC domain-containing protein 19
3swm_B9e-502619322174NAC domain-containing protein 19
3swm_C9e-502619322174NAC domain-containing protein 19
3swm_D9e-502619322174NAC domain-containing protein 19
3swp_A9e-502619322174NAC domain-containing protein 19
3swp_B9e-502619322174NAC domain-containing protein 19
3swp_C9e-502619322174NAC domain-containing protein 19
3swp_D9e-502619322174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246091.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A165Y9L10.0A0A165Y9L1_DAUCS; Uncharacterized protein
STRINGXP_009778771.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-88NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]