PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013568

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 334aa MW: 37078.7 Da PI: 6.3254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013568	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	181	228	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq DCAR_013568 181 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 228 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-15	175	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-9	175	232	No hit	No description
PROSITE profile	PS50888	14.634	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	177	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-7	181	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEPTEEVRSG KLVEEIADES LRFGEELQTL MSVPPESGNS FTALLELPPN QAVKLLHTPE 60 KLAGEAQQPK LYPYAPIFPS NPALIDRASK FSVFATENSP ERSSIPANYV KQEPVESESH 120 RNSSPGMSDS VVPNSDQKSS KRKEREKKAK APSKKSKNAE NDKEKLPYVH VRARRGQATD 180 SHSLAERARR EKINARMKLL QELVPGCNKI SGTAMVLDEI INHVQSLQRQ VEFLSMRLAA 240 VNPRVDINLD GLFATEGGSM IESSFPGVCM PTTCMEGQVN GSINRQQYQH LWPFDLLHQP 300 SWVREEDNTN FVTPDNSLLS YDSVANSGNL HIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017248028.1	0.0	PREDICTED: transcription factor bHLH48-like
Swissprot	Q8VZ02	4e-90	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A162AD49	0.0	A0A162AD49_DAUCS; Uncharacterized protein
STRING	VIT_08s0007g07870.t01	1e-129	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	7e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_013568

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]