PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012853
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 321aa    MW: 34174.6 Da    PI: 7.3475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012853genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.7e-10205250145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r+ WT  Ed+ l+ avk+ G g+W+ I ++   k Rt+ q+  rw+
      DCAR_012853 205 RKLWTDAEDLELLAAVKKCGEGNWANILKEQLmKERTASQLSQRWN 250
                      567*************************998889***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.914200257IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-14201256IPR009057Homeodomain-like
SuperFamilySSF466892.42E-12201254IPR009057Homeodomain-like
SMARTSM007172.7E-9204255IPR001005SANT/Myb domain
CDDcd116609.29E-13208254No hitNo description
PfamPF139211.5E-7208252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MATIKKVFIT EGDISTLLGR YSGTTIFALL QEVAQVPGKK YDWNELVKNS NTGITNAREY  60
QMVWRHLAYR APLVEELDDQ EVEPLDDDSD LDCELEALPT VTADASAEAA ACVKVLIASG  120
MPSNSTLPTG STIEAPLTIS IPNRQPARGP SANSQPSTFV HGTSITVPVS VQKQPLPAVT  180
PATAATPATT AEGLESGNLP PRRKRKLWTD AEDLELLAAV KKCGEGNWAN ILKEQLMKER  240
TASQLSQRWN IIKKRKRNSS LPGGEGNSTL GGKGNSSSGG GAQLSEAQLA ARRAMSLALN  300
MPLTDKLMAS SSRGNSISYS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PRRKRKL
2246255QRWNIIKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244479.10.0PREDICTED: uncharacterized protein LOC108216277
TrEMBLA0A165Z9S60.0A0A165Z9S6_DAUCS; Uncharacterized protein
STRINGXP_006472453.11e-117(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.23e-58MYB_related family protein