PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009058
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 293aa    MW: 32108.5 Da    PI: 8.2997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009058genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011227248323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  Cp+C+ +F +  +L+ H ++ H
  DCAR_009058 227 CPICHVRFASATSLVDHVKKtH 248
                  *******************999 PP
2zf-C2H214.69.3e-05264286223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   Cp C+k F+++  L+ H  + H
  DCAR_009058 264 ICPRCSKGFRDPVALVEHVEKdH 286
                  5*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.14E-11459No hitNo description
PROSITE profilePS510398.271059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.6E-101052IPR000058Zinc finger, AN1-type
SMARTSM001540.00281352IPR000058Zinc finger, AN1-type
PfamPF014288.0E-131350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.5E-1191147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.7E-893142No hitNo description
PROSITE profilePS510397.98898146IPR000058Zinc finger, AN1-type
SMARTSM001540.07101142IPR000058Zinc finger, AN1-type
PfamPF014281.6E-7101141IPR000058Zinc finger, AN1-type
SMARTSM003550.026225248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871225253IPR007087Zinc finger, C2H2
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829263291IPR007087Zinc finger, C2H2
SMARTSM003559.7263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPAFPDLG KHCSVEDCKL IDFLPFTCDC CNKVFCLEHR SYSKHQCPKG NKHDVTVVIC  60
PLCAKGVQLN PEEDPNITWE SHVNTDCDPS NYEKVTKKKK CPVRGCRETL TFSNTIKCRD  120
CTVEHCLKHR FGPDHSCPGP KKPDTGFPFM SFLNTSRKED TRRNKAPISS SSKWTSTLLK  180
AASSVRASAE AGMTKLGNEF SQALQIGEGS SSNNGNAAAS NGQIEACPIC HVRFASATSL  240
VDHVKKTHEK DSTRPSVMKT TLDICPRCSK GFRDPVALVE HVEKDHAGYS KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237224.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ8VZ421e-124SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A165ZQI00.0A0A165ZQI0_DAUCS; Uncharacterized protein
STRINGXP_010102532.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein