PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004291
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 309aa    MW: 34697.4 Da    PI: 6.4267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004291genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.2e-13100151155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++++k+L+
  DCAR_004291 100 QRMTHITVERNRRKQMNEHLAVLRSLMPDS---YVQRGDQASIVGGAIDFVKELE 151
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1698167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-1298155No hitNo description
Gene3DG3DSA:4.10.280.106.4E-1398153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.00299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAMETLSSSE LLDFIIYDTI SAIPFSCNVS SDTTSNLHLL QQNAHLASAA TTPNALYNTS  60
SMNLSVKPET NSERSLAVQG RKKRRRRPKV CKNKEEAENQ RMTHITVERN RRKQMNEHLA  120
VLRSLMPDSY VQRGDQASIV GGAIDFVKEL EHILQSLEAQ KFLQMQESRE KLDSVEATPF  180
SQFFTFPQFT TSQTPNKHYT CTKTNGAIAD IEVTLIETHA NIRVLSRRRL RQLSKIIGGF  240
QAVYMTILHL NVTTLEPMVL YSISTKIEEG CPLKTADDIG GATHEMLRMI EEEEEVVAGL  300
QDYGEDLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRR
28186KKRRRR
3100111RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242921.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9SK911e-70BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A166IYP90.0A0A166IYP9_DAUCS; Uncharacterized protein
STRINGXP_009763212.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.16e-54bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]