PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004268
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 438aa    MW: 46360.1 Da    PI: 7.1279
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004268genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.12.6e-20333394162
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  e+e+kr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++++ e++k  ++
  DCAR_004268 333 EREIKRQKRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRAELSRIRSEYEKIVAQ 394
                  89*******************************************************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-27198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.5E-13138177No hitNo description
PfamPF165964.3E-29199301No hitNo description
Gene3DG3DSA:1.20.5.1707.4E-18326394No hitNo description
SMARTSM003381.6E-21333397IPR004827Basic-leucine zipper domain
PfamPF001702.1E-18333393IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.944335398IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-10336391No hitNo description
CDDcd147022.31E-24338388No hitNo description
PROSITE patternPS000360340355IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGSSEMEKSS KESKEPKTPT SQEQVSPVVA GSAAPVTPDW TGFQAYSPMP PHGYMASSPQ  60
APHPYMWGVQ HMMPPYGTPP HPYVMYPHGG IYAHPSMPPG SYPFSPFAIP SPNGVAAEAS  120
GNTPGSIEAD GKVSEGKEKL PIKRSKGSLG SLNMITGKNN EASKTSGLGA NGGYSKSKVI  180
AASAAYSIAM KVCTDSFGLN QIYSGESASE GSSEEGSDAN SQNDSQIKSG SRQDSLEAEA  240
SHNGNTHGLQ NGQYANNSMV NQPISVVPIS TAGPAGVLPG PTTNLNIGMD YWGGATSSAI  300
PAMRGQVSPP ITGGTLSAGA RDNVQPQHWL QDEREIKRQK RKQSNRESAR RSRLRKQAEC  360
DELAQRAEAL KEENASLRAE LSRIRSEYEK IVAQNAALKE KSRDVPGQED QWPGRNDQHT  420
GNGSKEPGNT ESAQSGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349355RRSRLRK
2349356RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY108090.0Y10809.1 P.crispum mRNA for bZIP DNA-binding protein CPRF4a.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230322.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-149BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A166IY180.0A0A166IY18_DAUCS; Uncharacterized protein
STRINGEMJ104010.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-139basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]