PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002688
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 248aa    MW: 26651.2 Da    PI: 6.6316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002688genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09102146554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P  +      K + a++L + v+Y+k L
  DCAR_002688 102 HSIAERLRRERIAERIRALQELVPGvN------KTDRATMLDEIVNYVKFL 146
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1595157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2497146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1598156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADHAAGDDF LDQILGFPSD AGALVPSLAG NQSSSSPMML QLNSAGGGVG LMNASGSVKI  60
FPDHVVNDTR LSSSGFQAQS MPHPHGSGQK KRAKRGQATD PHSIAERLRR ERIAERIRAL  120
QELVPGVNKT DRATMLDEIV NYVKFLRLQV KVLSMSRLGG ASAVAPLVTD IPISSIEEEV  180
GEDQRNQPLW EKWSNDGTER QVAKLMEENL GAAMQFLQSK ALCIMPISLA SAIYHTQPPD  240
STVHPSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228771.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227683e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A166HB770.0A0A166HB77_DAUCS; Uncharacterized protein
STRINGMigut.D00370.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.27e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]