PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002060
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 437aa    MW: 49322.2 Da    PI: 5.6967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002060genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.51.1e-20122218185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+  v++Li+++  ++++ + +            +kk++W+ vsk m ++g+ +sp+qC++k+++lnkryk+++++ +++ ++++++t ++ d++
  DCAR_002060 122 KWTDMIVRLLIQVVACVGDDGSLDGfkgtkrssgmlQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGmSCRVVETPSLMDSM 218
                  7**************777777744333445566777**********************************************889999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-17120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDNTSVGSGF LLGPSVGFID LESPVQQRQQ SQLGQSSTQH QMPSTMNMLG GNDDDRSIRF  60
MDGKGLNPKS FSMSFGRGNV ACVNAVNHHS VSEEDEPNFE DGNGENSSGA KGKKGSPWQR  120
MKWTDMIVRL LIQVVACVGD DGSLDGFKGT KRSSGMLQKK GKWKTVSKIM ISKGCYVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGMSCRVVE TPSLMDSMPQ LSSKMKEDVK KILSSKHLFY  240
QEMCAYHNGQ PIPNCAELDL QTHSLPNVQC SKENNVSEAE AEEDSEDDDG DSDSENDNPA  300
DQDFETFGRA NAHEDGFQAE VARFFEDPTK SKWEQTVWAK KKMLELQDQR VSIQAESFEL  360
QKRRFKWERF CEKKNTELEI SKLENERMLL ENERMAMQLK HKVVEMDSGN QGPSVNQIHN  420
PNRQQVKNQI DLGRHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257850.10.0PREDICTED: uncharacterized protein LOC108227291
TrEMBLA0A166GVN70.0A0A166GVN7_DAUCS; Uncharacterized protein
STRINGcassava4.1_007480m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-62sequence-specific DNA binding transcription factors