PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.395170.1 | ||||||||
Common Name | Csa_2G351760, LOC101204223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 487aa MW: 54636.1 Da PI: 6.1933 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 416 | 454 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Cucsa.395170.1 416 MFQNflHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVR 454 6887779******************************88 PP | |||||||
2 | BELL | 63.6 | 4.1e-21 | 291 | 355 | 5 | 70 |
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 + +kk++Ll+ll+ +d+rY q+ ++++tv s+F+a+++l++ +++t+ l++i+ +++L+++i++ Cucsa.395170.1 291 VDAKKSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDP-RLHTRYTLQTITSVYKNLREKITS 355 679**************************************.**********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-14 | 212 | 355 | IPR006563 | POX domain |
Pfam | PF07526 | 8.3E-22 | 218 | 354 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 395 | 458 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-5 | 398 | 462 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.09E-10 | 398 | 459 | No hit | No description |
SuperFamily | SSF46689 | 2.52E-15 | 399 | 467 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 401 | 464 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-14 | 415 | 454 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MSTALQRIDM GDACLGPSGN AEFQNQLAVA IPISLFQSTS LAPVNDIRGN IKDSAFPDPQ 60 FQQLETFRTC FLHSYSNASN SSFASSLICE GDESLCNANN KWESDRFHCI QQLSGENPET 120 SDSQTVLSME HLHQNGWMSS NTMNSKLWNE LSLSLATTEP VLSGGTDFLD QYSQLTFSGA 180 TQPCLNSTEL ASNLNSGSSR DLSLSYGCGN SVRLSRAIAG SRYLSVIQDV LSQIASYPLE 240 NSDQVDHSTT ATGFVPLSSS SSLDDATIEY GSDVTGRYSS QMEPEWQNLS VDAKKSHLLT 300 LLQLIDERYT QCLDEIHTVT SAFHAATDLD PRLHTRYTLQ TITSVYKNLR EKITSCIFAI 360 GKHSNATCTK EKEKFFEATF LQKQWALQQL KRKDNQLWRP QRGLPEKSVS VLRAWMFQNF 420 LHPYPKDTEK HLLAVKSGLT RNQVSNWFIN ARVRLWKPMI EEMYAEMSRR KSNQNEEGIE 480 RIHCPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 404 | 462 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143038.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649535.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649536.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649537.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649538.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649539.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_011649540.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Swissprot | P48731 | 2e-98 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A0A0LKF3 | 0.0 | A0A0A0LKF3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159574.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-100 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.395170.1 |
Entrez Gene | 101204223 |
Publications ? help Back to Top | |||
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