PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.361410.1
Common NameCsa_4G166950
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 290aa    MW: 31795.2 Da    PI: 8.3813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.361410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049223245223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+  Fs+ s+L  H  + H
  Cucsa.361410.1 223 QCPQCSAKFSSVSSLIDHVEKvH 245
                     7*****************99888 PP
2zf-C2H2157.1e-05262283323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     Cp+C++ F ++  L+ Hi + H
  Cucsa.361410.1 262 CPKCSRGFVDPVALVEHIERdH 283
                     ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.57E-12459No hitNo description
PROSITE profilePS510397.821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.9E-101053IPR000058Zinc finger, AN1-type
SMARTSM001549.9E-41352IPR000058Zinc finger, AN1-type
PfamPF014289.0E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.9E-1191144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.63E-993143No hitNo description
PROSITE profilePS510398.14998147IPR000058Zinc finger, AN1-type
SMARTSM001540.0086101142IPR000058Zinc finger, AN1-type
PfamPF014289.3E-9101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.85222245IPR007087Zinc finger, C2H2
SMARTSM003550.027222245IPR015880Zinc finger, C2H2-like
PfamPF138943.0E-4223245No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM0035511260283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538260288IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPEFPNLG KHCNFAECKQ IDFLPFTCDC CHQVFCLEHR SYNRHSCPKA DRWDVTVVIC  60
PLCAKGVRLI PDQDPNITWE IHVNTECDPS NYDKVTKKKK CPVPGCRELL TFSNTIKCRD  120
CSLDHCLKHR FGPDHKCPGP KKLEPTGFPF VGLLNRSRKE EKGPKKALST TSSSKWTAFL  180
NAASSVKASA EASMTKLSNE FSQTWISSGS SSNGGGGNGQ VEQCPQCSAK FSSVSSLIDH  240
VEKVHERGGN RTGPKKVVID ACPKCSRGFV DPVALVEHIE RDHGGTSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8703020.0AJ870302.1 Cucumis sativus mRNA for somatic embryogenesis zinc finger 2 (SEF2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267641.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-123SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0A0L1350.0A0A0A0L135_CUCSA; Uncharacterized protein
STRINGXP_004162178.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]