PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.340570.1

Common Name

Csa_3G843820, LOC101205734

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 290aa MW: 32262.3 Da PI: 9.643

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.340570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.7	7.9e-19	208	242	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C++ Tp+WR+gp g+ktLCnaCG++y+k g+ Cucsa.340570.1 208 CSHCQAQRTPQWRSGPLGPKTLCNACGVRYKKSGR 242 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.0E-17	202	253	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.099	202	262	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.09E-17	204	267	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.2E-15	205	243	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.81E-14	207	255	No hit	No description
PROSITE pattern	PS00344	0	208	233	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.3E-16	208	242	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDYQQETASV NYKCEQDDCS NLEAEFSSTI DDILYSSQAM TMDVDVSLEW LSAFVEECLS 60 TKGSTLPLPP PSQLSTQLNN PPTKPSSLSQ LVPTSSNSQF AHFPAVPGKA RSKRRRRTPS 120 KMSVLPLISR RLRQLNLLQN KHSLQLTTST DPLLLQQTYW LADSELLLPP KARGGEREKT 180 VDMGQIETTV ENSMKKQQQQ GAGSGRRCSH CQAQRTPQWR SGPLGPKTLC NACGVRYKKS 240 GRLLPEYRPA NSPTFVSLLH SNSHKRVMEM RMMNASSSTS TSTTTFPSSX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681839	0.0	LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141141.1	0.0	PREDICTED: GATA transcription factor 9-like
TrEMBL	A0A0A0LD86	0.0	A0A0A0LD86_CUCSA; Uncharacterized protein
STRING	XP_004171751.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8487	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	4e-39	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Cucsa.340570.1
Entrez Gene	101205734

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]