PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338700.1
Common NameCsa_3G824990, LOC101214698
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 285aa    MW: 32488.3 Da    PI: 7.7518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.43.8e-5531331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv +++++   +i+evd++k+ePwdLp ++k +ekewyf++ rd+ky+tg r+nrat++gyWkatgkdke+l+ 
  Cucsa.338700.1   3 LPPGFRFHPTDEELITHYLSPKVLSSTFSS-PAIAEVDLNKCEPWDLPGRAKMGEKEWYFYCVRDRKYPTGLRTNRATEAGYWKATGKDKEILKG 96 
                     79*************************999.78***************99999****************************************98 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ vg+kktLvfykgrap+g+k++Wvmheyrl
  Cucsa.338700.1  97 rnhnNNNIVGMKKTLVFYKGRAPRGHKSNWVMHEYRL 133
                     66656666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-622175IPR003441NAC domain
PROSITE profilePS5100559.3873175IPR003441NAC domain
PfamPF023655.2E-294133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MELPPGFRFH PTDEELITHY LSPKVLSSTF SSPAIAEVDL NKCEPWDLPG RAKMGEKEWY  60
FYCVRDRKYP TGLRTNRATE AGYWKATGKD KEILKGRNHN NNNIVGMKKT LVFYKGRAPR  120
GHKSNWVMHE YRLHSNNNHS SSSSSSPYSQ HHPLPLPLPT TSSQKEWVIC RIFQKSESSM  180
GKKGNDEITM AESSSSSSLH ALPPLTDSDP ALHVTCFSNS TEMEPEDFHY LQNHDAFFWL  240
PDFQDIKQTQ IFSSSTTTTN KPSNYDHYQL HPSPPPPPPS LWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-52117918172NAC domain-containing protein 19
3swm_B4e-52117918172NAC domain-containing protein 19
3swm_C4e-52117918172NAC domain-containing protein 19
3swm_D4e-52117918172NAC domain-containing protein 19
3swp_A4e-52117918172NAC domain-containing protein 19
3swp_B4e-52117918172NAC domain-containing protein 19
3swp_C4e-52117918172NAC domain-containing protein 19
3swp_D4e-52117918172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-114LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-114LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136698.10.0PREDICTED: NAC domain-containing protein 100 isoform X1
SwissprotQ9FLJ23e-85NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A0LF851e-180A0A0A0LF85_CUCSA; Uncharacterized protein
STRINGXP_004136698.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.17e-82NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]