PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.307230.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 477aa    MW: 52309.7 Da    PI: 6.3797
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.307230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17155204155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cucsa.307230.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204
                     78*******************......55************************997 PP
2AP242.81.3e-13247297155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+++ +g
  Cucsa.307230.1 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALRCNG 297
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-11155213No hitNo description
SuperFamilySSF541711.05E-15155213IPR016177DNA-binding domain
PfamPF008473.1E-9155204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-17156212IPR001471AP2/ERF domain
SMARTSM003802.6E-31156218IPR001471AP2/ERF domain
PROSITE profilePS5103217.754156212IPR001471AP2/ERF domain
CDDcd000183.19E-24247307No hitNo description
SuperFamilySSF541711.96E-16247306IPR016177DNA-binding domain
PfamPF008473.7E-9247297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-16248305IPR001471AP2/ERF domain
SMARTSM003802.2E-29248311IPR001471AP2/ERF domain
PROSITE profilePS5103215.461248305IPR001471AP2/ERF domain
PRINTSPR003675.3E-6249260IPR001471AP2/ERF domain
PRINTSPR003675.3E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDLNLEVVS SESASDSVEM VTDRFLQFPA NRMESAGSFN SSSIVNGDLS ASTTGDEDSS  60
SNADEAFPFA FGKDYADQES LTAKSLCVFD DHRDQTMVLF PLTGGLSSGS SPLKRWPEVS  120
PSEFGYCGGA PDRRITAPPT QQQRKNRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGIDADIN FNVCDYDEDI KQMSNFTKEE FVHILRRHST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EIEAARAYDK AALRCNGKEA  300
VTNFEPSSYV AEMASENDIG ENNQIIDLNL GIAPPNLSDA RNESIGMFGN GIHHSSQEVL  360
VDRRAMPENS VSTAIRSSQP YSSAVPSNYH SSWNVSNSSF FPVSRERATE MRMGVGSWEW  420
QIHGHPSGTT SVPLFSAAAS SGFPSSSSSS SSSTAVSSAS QAVGEIHFPA IFYCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651932.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0A0LAS90.0A0A0A0LAS9_CUCSA; Uncharacterized protein
STRINGXP_004166586.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-95related to AP2.7