PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.302590.1 | ||||||||
Common Name | Csa5G156220, Csa_5G156220, LOC101221467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28402.2 Da PI: 7.5438 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 75 | 125 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ s + +Lr+llP ++K s ++ +++v YI+++q Cucsa.302590.1 75 IIHRDVERQRRQEMSSLYTTLRSLLPLeY---LKGKRSISDHMQETVSYIQHMQ 125 5699***********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.97E-12 | 71 | 129 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-14 | 71 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.471 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 76 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-6 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEMFNAESPF SFDVGEDLVP LPSLPSSSVI SPPLDNYGNR VSQKPKNGRR KKPLPNTCND 60 DGGDENHDEQ KKKKIIHRDV ERQRRQEMSS LYTTLRSLLP LEYLKGKRSI SDHMQETVSY 120 IQHMQRRIQQ LKDKRGTLRE LASQTTVAIA GTTETLNSSE RASAVVRAKD GIGIQVVLDT 180 ATKQRLPLSI FVQALVSEGL EILNCISNRL NERFIHTIEC QPLLNDDGCY PTIDVSVLQH 240 KLANLEYYPL D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM655851 | 0.0 | KM655851.1 Cucumis sativus bHLH transcription factor (Csa5G156220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295816.1 | 0.0 | transcription factor bHLH118-like | ||||
TrEMBL | A0A097IYN6 | 0.0 | A0A097IYN6_CUCSA; BHLH transcription factor | ||||
STRING | XP_004144002.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.302590.1 |
Entrez Gene | 101221467 |
Publications ? help Back to Top | |||
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