PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.302570.1 | ||||||||
Common Name | Csa_5G157230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 26388 Da PI: 9.881 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 82 | 141 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ + ++ Lr+llP + + +++K s + ++v+YI+++q Cucsa.302570.1 82 IIHRDVERQRRQEMSTLYAALRSLLPVEYlkvkligASSNGKRSICDHMHETVKYIQHMQ 141 5699***********************777*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-12 | 77 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-7 | 78 | 145 | No hit | No description |
PROSITE profile | PS50888 | 12.189 | 79 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-11 | 82 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 83 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-4 | 85 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDLDCIQSPF PFDQVDELFP LPSLSPIHLS VADHPPLIAS INNTNRNISE KPKKGRRRKS 60 PNTSADIEDE NPNPNEHKKK KIIHRDVERQ RRQEMSTLYA ALRSLLPVEY LKVKLIGASS 120 NGKRSICDHM HETVKYIQHM QTKIQMLRNK RDELKKNIED GEDSRNITTI ETLNSSKRDS 180 VLVMPRSCGG VQILLDTATH HRLPLSNLIK FLITQNLQII SCHSTRKNDX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM655852 | 0.0 | KM655852.1 Cucumis sativus bHLH transcription factor (Csa5G157230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295841.1 | 1e-157 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0A0KMQ4 | 1e-157 | A0A0A0KMQ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004164316.1 | 1e-158 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.302570.1 |
Publications ? help Back to Top | |||
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