PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.277160.1 | ||||||||
Common Name | Csa_5G276460, LOC105435479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 158aa MW: 17891.2 Da PI: 9.1993 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.2 | 1e-29 | 21 | 72 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH++Fv a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+ Cucsa.277160.1 21 PRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMM 72 8*************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 17 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-13 | 19 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-21 | 21 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 22 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSSNSCGRNG SVRQYIRSKV PRLRWTPDLH HSFVLAIERL GGHQKATPKL VLQLMDVKGL 60 TISHVKSHLQ MMKQEAHERA EKIKESKCFE LSLSLSLQHH YHHSSSEMSE AISSSSSKLD 120 DNNNNDDYRD SWSWSYGREQ PKIGVNLDLT MALCGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 22 | 70 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 22 | 70 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 22 | 70 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 22 | 70 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 22 | 70 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681904 | 3e-69 | LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053. | |||
GenBank | LN713264 | 3e-69 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655099.1 | 4e-44 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_016902518.1 | 4e-44 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0A0KSV1 | 9e-43 | A0A0A0KSV1_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S4E2S3 | 1e-42 | A0A1S4E2S3_CUCME; putative Myb family transcription factor At1g14600 | ||||
STRING | XP_008460208.1 | 3e-43 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 4e-30 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.277160.1 |
Entrez Gene | 105435479 |
Publications ? help Back to Top | |||
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