PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.240980.1

Common Name

Csa_3G775260, LOC101210630

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 541aa MW: 59638.4 Da PI: 6.9675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.240980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.7	5e-08	186	248	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke +r rr NRe+Ar +R++a +eeL++k++ L eN+ Lk e e ke+++l++ + Cucsa.240980.1 186 EKEERRIRRILANRESARQTIRRRQALCEELTRKAADLAWENENLKREKEVALKEYQSLETTN 248 78999****************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.0E-6	186	248	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.3E-11	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.898	188	251	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-5	190	243	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.8E-5	190	256	No hit	No description
CDD	cd14702	1.93E-12	191	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA 60 EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE 120 QQDRGVVKHQ PSEKECTIQS QPEPETTGEV TKMDKEAESS KVSPACTTSY QFFGCRRSRR 180 TLTEAEKEER RIRRILANRE SARQTIRRRQ ALCEELTRKA ADLAWENENL KREKEVALKE 240 YQSLETTNKE LKEQLAEAVK PKVEEIPGNH RSSHVQMPPL PTNCPLFLFS RLPYFWPSVV 300 QSTSSYHELP NVVVVPSSIN PPANNNASVS GSSQTQENFT NGTGSRAPLC ILPPYSWLLP 360 HHDFRNQQSP QIWFPAGNDQ EGVYSKSQNS AITSKDVRAE SRHSSLPSAE EENEAPDLNE 420 APSLDESSNP KDDTQNTVGV AVEGFDTNAR APVRKVLSPV RLECIEPSSA ATLDNWNEDD 480 HGVSSRTCDD LCYFAERRHE PEVVPCKKTV DAMAATEARR RRKELTKLKN LYARQCRMQS 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MGSLPLTLMA ASSSKCSDGT TSSGLSSSSS SSSSSSSSSS MSSSMAKAAD QMVKVEIEAA  60
EALAGLAVLA VRETGTQPFQ TKWGIKGKGK RARKEVKTES PTSGFADSLP ARADLDLRIE  120
QQDRGVVKHQ PSEKECTIQS QPEPETTGEV TKMDKEAESS KVSPACTTSY QFFGCRRSRR  180
TLTEAEKEER RIRRILANRE SARQTIRRRQ ALCEELTRKA ADLAWENENL KREKEVALKE  240
YQSLETTNKE LKEQLAEAVK PKVEEIPGNH RSSHVQMPPL PTNCPLFLFS RLPYFWPSVV  300
QSTSSYHELP NVVVVPSSIN PPANNNASVS GSSQTQENFT NGTGSRAPLC ILPPYSWLLP  360
HHDFRNQQSP QIWFPAGNDQ EGVYSKSQNS AITSKDVRAE SRHSSLPSAE EENEAPDLNE  420
APSLDESSNP KDDTQNTVGV AVEGFDTNAR APVRKVLSPV RLECIEPSSA ATLDNWNEDD  480
HGVSSRTCDD LCYFAERRHE PEVVPCKKTV DAMAATEARR RRKELTKLKN LYARQCRMQS  540
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	518	523	RRRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652004.1	0.0	PREDICTED: uncharacterized protein LOC101210630 isoform X1
TrEMBL	A0A0A0LBD4	0.0	A0A0A0LBD4_CUCSA; Uncharacterized protein
STRING	XP_004161242.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6400	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	5e-50	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.240980.1
Entrez Gene	101210630

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]