PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.200410.1
Common NameCsa_1G132120
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 335aa    MW: 37847.7 Da    PI: 9.4007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.200410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  Cucsa.200410.1 169 HYCQICGKGFKRDANLRMHMRAH 191
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-6167194No hitNo description
SMARTSM003550.0028169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632169196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-6169195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0021170189No hitNo description
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SMARTSM0035593222255IPR015880Zinc finger, C2H2-like
SMARTSM0035517260282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
EKLHQIQSVV NIALYNLQNS TESLPSAPPA SSQSPVATAA VNSLIQELIM AASSMLFTCQ  60
QMDNLAVNAS LHNNNVGNNL QGQHHQHQHQ HQQQGPVDDN NGRSNTLFNM ANDHHHQRQD  120
WYNTTTSNNY NKDNNNGRTI MTTKTTQDHR NPINIVELDA SDLLAKYTHY CQICGKGFKR  180
DANLRMHMRA HGDEYKASGA LSNPEKSHRK DLSNISKMGI KYSCPQEGCR WNQKHVKFQP  240
LKSLICVKNH FKRTHCPKMY VCKLCSRKKF SVLSDLRTHE KHCGDVKWLC SCGTTFSRKD  300
KLMGHVALFV GHTPAMGSST KFLGKQEHEY VHSF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139560.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-105STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0A0LXZ10.0A0A0A0LXZ1_CUCSA; Uncharacterized protein
STRINGXP_004173281.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-99C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]