PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.193460.1 | ||||||||
Common Name | Csa_5G148470, LOC101206531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 45842.9 Da PI: 6.7755 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + Cucsa.193460.1 11 VPPGFRFHPTEEELLHYYLRKKVAFQKIDL-DVIRDVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKII 104 69****************************.9***************964444222455************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ +gl+ktLvfykgrap+g+k+dW+mheyrl Cucsa.193460.1 105 YT-GSKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.902 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MTLSVNGHSQ VPPGFRFHPT EEELLHYYLR KKVAFQKIDL DVIRDVDLNK LEPWDIQEKC 60 KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKIIYTGSKR IGLRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DSDRDINICN SIGESQLAED GWVVCRVFKK KNYQKSIDSP 180 KTSPTSMDSE VHLLNSNNDG VLDQILQYMG RTCKLEMESF SNNINNNSNS SSRLILSPNN 240 NNTEDHQQQT IDKSFMHLPR LDSPTTIPSI ISLHQLETSS PFDHNIIFNH EMLSVSETTT 300 EPSPRPVVKL DNWVAFDRLV ASQLNGQDER SVMEDDEDEQ QQQQQQHHHH HHHEQQHHHH 360 HMQVSNRVLG YGHENDIWGF TKSSSSSSLD PLSHLSV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-50 | 11 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3ulx_A | 7e-50 | 11 | 172 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00016 | PBM | Transfer from AT1G32770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143941.1 | 0.0 | PREDICTED: NAC domain-containing protein 12 | ||||
Swissprot | Q9LPI7 | 1e-115 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | A0A0A0KQL0 | 0.0 | A0A0A0KQL0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004169621.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-105 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.193460.1 |
Entrez Gene | 101206531 |