PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.185800.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 324aa    MW: 36374.6 Da    PI: 5.3128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.185800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.11.5e-48171441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     + pGfrF+P+deel+ +yLkkk+eg++ ++ +vi+e++i+k+ePwdLp  k +  +e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+
  Cucsa.185800.1  17 MFPGFRFSPKDEELILFYLKKKLEGSDDSV-DVISEIEICKFEPWDLPaGKSRIpSENEWFFFSPRGRKYPNGTQNKRATELGYWKATGKERNVK 110
                     579************************999.99***************4333334788************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++e +g+k+tLvf+ grap+ge+t+W+mhey l
  Cucsa.185800.1 111 T-GSEIIGTKRTLVFHLGRAPTGERTEWIMHEYCL 144
                     9.9******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-539161IPR003441NAC domain
PROSITE profilePS5100551.86117162IPR003441NAC domain
PfamPF023653.5E-2519144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGGVSREAEM SMAALSMFPG FRFSPKDEEL ILFYLKKKLE GSDDSVDVIS EIEICKFEPW  60
DLPAGKSRIP SENEWFFFSP RGRKYPNGTQ NKRATELGYW KATGKERNVK TGSEIIGTKR  120
TLVFHLGRAP TGERTEWIMH EYCLNDKSQD SNSMVVCRLR KNNDFRRNNA DKATSSKVQA  180
GSGEEGDGGI GEKVAGESDR FSKNCSSSLG SHSLDQIDSA IESNQKQTSD PAIHEPLRQE  240
KSYCEFTNIT NGNECEYVKG NGGDEELYAD LLKDDIITLD DSLLCATHNQ TPMNRMNERV  300
NHLFGFGPIC HLELHLSGQC WSIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-441216312166NO APICAL MERISTEM PROTEIN
1ut4_B3e-441216312166NO APICAL MERISTEM PROTEIN
1ut7_A3e-441216312166NO APICAL MERISTEM PROTEIN
1ut7_B3e-441216312166NO APICAL MERISTEM PROTEIN
4dul_A3e-441216312166NAC domain-containing protein 19
4dul_B3e-441216312166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-125LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-125LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658461.10.0PREDICTED: uncharacterized protein LOC101203389
TrEMBLA0A0A0KGX00.0A0A0A0KGX0_CUCSA; Uncharacterized protein
STRINGXP_004170400.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-82NTM1-like 8