PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.169240.1

Common Name

Csa_2G263910, LOC101213608

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 336aa MW: 37174.4 Da PI: 5.5364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.169240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	53	102	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+ + rE+ RR r+N+ f eL +l ++ +K++Ka+iL +++ +k+L Cucsa.169240.1 53 RRVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKATILMDTIQLLKDL 102 799999*******************997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.29E-14	51	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.627	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-12	52	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-5	53	106	No hit	No description
Pfam	PF00010	1.1E-6	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-5	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDQLIQRDGL LQNPPTPSSS SSVVPCVELP GHPIRSQSSS RSEGEFKDSA AARRVQKADR 60 EKLRRGRLNE QFVELGNILD PDRPKNDKAT ILMDTIQLLK DLTSQVNKLK AEYATLTEES 120 QELAQEKSDL REEKALLKSD IENLNTQYQQ KLRATYPWAA MDHSVVMAPA PFPFPMPMQM 180 PPGPYPLHPS LQPFTFFGNP DPRVIANPCS TFVPYIPPNS LTEQQSSQNA PPFIQSDNRS 240 RNLSEQNTRS KSSIESKIEK SEDSNEVATC LELKTPGSST DQDTSYEQTN GKNRKESNLS 300 VESSSSRCSS PRSLEANSSS SMPNGRKSTD ICGSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681913	0.0	LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147018.1	0.0	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	1e-91	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0A0LPK4	0.0	A0A0A0LPK4_CUCSA; Uncharacterized protein
STRING	XP_004147018.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-82	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.169240.1
Entrez Gene	101213608

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]