PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.148840.1

Common Name

Csa_7G041360, LOC101205276

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 327aa MW: 36402.4 Da PI: 5.2608

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.148840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.5e-11	187	230	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Cucsa.148840.1 187 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 230 899*********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-14	183	247	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.6E-9	184	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	185	237	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-11	187	238	No hit	No description
SuperFamily	SSF57959	4.42E-11	187	241	No hit	No description
CDD	cd14703	2.15E-22	188	238	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAQLPPKIPN MASNWSELSR QKIPSMETFA PTTTTPPVTQ QNPSWVDEFL DFSSVRRGSH 60 RRSVSDSITF LEMPMLEDDC RASAAPPPPS TATGDQNEFD RFDDEQFLSM FNDEISAAVA 120 PTLSSSNPST PSDHNSINDE KDAQNDGKVN QNKNEPDEVQ SQQQSENQTQ SNSTATAGST 180 DRITDPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTSL QAEVSVLSPR VAFLDHQRLL 240 LNVDNSALKQ RIAALAQDKI FKDAHQEALK REIERLRQVY HQQNIKKMEN ASPSPAITPS 300 QPVATTVPDA KLPNVDQNEQ VPNVMV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144514.1	0.0	PREDICTED: basic leucine zipper 61
Swissprot	Q9M2K4	1e-121	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A0A0K6T0	0.0	A0A0A0K6T0_CUCSA; Uncharacterized protein
STRING	XP_004144514.1	0.0	(Cucumis sativus)
STRING	XP_004165677.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2011	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-92	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.148840.1
Entrez Gene	101205276

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]