PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.143830.1

Common Name

Csa_5G223070

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 283aa MW: 31598.8 Da PI: 5.9248

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.143830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	72.4	5.8e-23	121	183	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT..EEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk..vveitYegeHnhe 59 +D y WrKYGqK ++++++prsYYrCt++ gC+++k+v+r + d + + +itY ++H+++ Cucsa.143830.1 121 EDNYGWRKYGQKAIHNTTYPRSYYRCTHKfdqGCQATKQVQRMEGDDSeiMYNITYISDHTCR 183 7*************************9999******99776534679*****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-24	106	185	IPR003657	WRKY domain
PROSITE profile	PS50811	18.601	115	183	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-22	115	185	IPR003657	WRKY domain
SMART	SM00774	3.1E-30	120	184	IPR003657	WRKY domain
Pfam	PF03106	9.8E-23	121	183	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009751	Biological Process	response to salicylic acid
GO:0031347	Biological Process	regulation of defense response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDAPEFSHGR ISPAELRRKI TAKLLPGQDS AAHLRILLQS ATATEQDKRA LATKILTSIT 60 EAISILESAG EELSCPDHSL CSDLDSGESR RSRAVKDNPS RANKRRRSMN SRSVRTSRTT 120 EDNYGWRKYG QKAIHNTTYP RSYYRCTHKF DQGCQATKQV QRMEGDDSEI MYNITYISDH 180 TCRRPASPID ASAITTLSDS SNLISFSSID CNGPFTEGTG YSLISWRPSD DDVVKIGETA 240 TTSGSTDDHE IDLWSDLKDF LELPNNGYDN DNEESILFLN RR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-18	118	183	6	69	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984028	0.0	GU984028.1 Cucumis sativus WRKY protein (WRKY34) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267638.1	0.0	probable WRKY transcription factor 54-like
TrEMBL	A0A0A0KMB3	0.0	A0A0A0KMB3_CUCSA; Uncharacterized protein
STRING	XP_004146432.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24556	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40750.1	2e-31	WRKY DNA-binding protein 54

Link Out ? help Back to Top
Phytozome	Cucsa.143830.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]