PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.126860.1

Common Name

Csa_1G075030, LOC101212815

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 161aa MW: 17289.3 Da PI: 10.013

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.126860.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.2	2.6e-20	8	57	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g Cucsa.126860.1 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 57 69*****.******883....5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.77E-22	8	66	IPR016177	DNA-binding domain
SMART	SM00380	3.3E-37	8	71	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-32	8	65	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.761	8	65	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-13	8	57	IPR001471	AP2/ERF domain
CDD	cd00018	2.80E-30	8	65	No hit	No description
PRINTS	PR00367	4.5E-11	9	20	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-11	31	47	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MASTREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGSKA 60 KTNFPPPLPG LSLDLNVSGP WPTPTSAPPC SSSSSSPSPS STRFLLGDFL RHGVRNDICN 120 LNVDASPVLV DSSASGSSTA SASFIGHVRR GLPFDLNEPP P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-22	8	65	5	63	ATERF1
3gcc_A	2e-22	8	65	5	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00645	PBM	Transfer from LOC_Os05g41760	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146616.1	1e-112	PREDICTED: ethylene-responsive transcription factor 12
Swissprot	Q94ID6	2e-42	ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBL	A0A0A0LSE4	1e-111	A0A0A0LSE4_CUCSA; Uncharacterized protein
STRING	XP_004146616.1	1e-112	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF330	34	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	2e-40	ERF domain protein 12

Link Out ? help Back to Top
Phytozome	Cucsa.126860.1
Entrez Gene	101212815

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]