PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.112890.1
Common NameCsa_1G038340, LOC101220421
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 333aa    MW: 37573.1 Da    PI: 9.2235
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.112890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55171431129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+kkv ++++ + + i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ 
  Cucsa.112890.1  17 LPPGFRFHPTDEELISHYLCKKVVDSNFCC-KPIGEVDLNKSEPWDLPWKAKMGEREWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIYR- 109
                     79*************************999.88***************888999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ lvg+kktLvfy+grapkgek++Wvmhe+rle
  Cucsa.112890.1 110 GKILVGMKKTLVFYRGRAPKGEKSNWVMHEFRLE 143
                     99*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6214167IPR003441NAC domain
PROSITE profilePS5100557.3717167IPR003441NAC domain
PfamPF023657.9E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEQNIAPPVL EESQIVLPPG FRFHPTDEEL ISHYLCKKVV DSNFCCKPIG EVDLNKSEPW  60
DLPWKAKMGE REWYFFCLRD RKYPTGLRTN RATESGYWKA TGKDKEIYRG KILVGMKKTL  120
VFYRGRAPKG EKSNWVMHEF RLEGKASVIN LPNTAKNEWV ISRVFQKSCG GKKVHISGLV  180
KLGSCSSALP PLKDSSSSLS PFKIKPVSEL AHVPCFSNTM DSSQRTLPKI NDCSFNFSSF  240
FPTIFPRNTQ PTSLLNPQSI SFPLNLQFQN MARTEADGRI SVSQETGLTT DINNEISSVV  300
SNLEMVRLPF ENQHNPSAST VPLMNPPMVW NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-541317313171NO APICAL MERISTEM PROTEIN
1ut4_B8e-541317313171NO APICAL MERISTEM PROTEIN
1ut7_A8e-541317313171NO APICAL MERISTEM PROTEIN
1ut7_B8e-541317313171NO APICAL MERISTEM PROTEIN
3swm_A8e-541317316174NAC domain-containing protein 19
3swm_B8e-541317316174NAC domain-containing protein 19
3swm_C8e-541317316174NAC domain-containing protein 19
3swm_D8e-541317316174NAC domain-containing protein 19
3swp_A8e-541317316174NAC domain-containing protein 19
3swp_B8e-541317316174NAC domain-containing protein 19
3swp_C8e-541317316174NAC domain-containing protein 19
3swp_D8e-541317316174NAC domain-containing protein 19
4dul_A8e-541317313171NAC domain-containing protein 19
4dul_B8e-541317313171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137588.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-126NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A0LVJ80.0A0A0A0LVJ8_CUCSA; Uncharacterized protein
STRINGXP_004173604.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-123NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]