PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.109250.1 | ||||||||
Common Name | Csa_2G250430, LOC101207039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | DBB | ||||||||
Protein Properties | Length: 181aa MW: 19762.4 Da PI: 7.0722 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.9 | 2.4e-09 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++++e++ fC +++ lC+ C ++H+ H+ Cucsa.109250.1 3 IRCDVCDKEEASVFCPSDEAALCAPCDRQIHRAnklasqHN 43 58*****************************7667777776 PP | |||||||
2 | zf-B_box | 23.7 | 1e-07 | 60 | 98 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +e+ C+ ++ ++ lfC++++ lC++C +H Ht Cucsa.109250.1 60 SEPLCDICQIRRAFLFCREDRAILCRECDIPIHDTseHT 98 5899*****999********************9546765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.637 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.4E-7 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.81E-6 | 3 | 35 | No hit | No description |
SMART | SM00336 | 1.9E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.94 | 59 | 106 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-11 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-7 | 61 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.96E-7 | 62 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MKIRCDVCDK EEASVFCPSD EAALCAPCDR QIHRANKLAS QHNRFSLLHS SASASAAATS 60 EPLCDICQIR RAFLFCREDR AILCRECDIP IHDTSEHTQK HSRFLLTGVK VSPSPATSSS 120 CSSSVASSGE ENEGSLKKCS RKRSKMGFSK GLVISEYLES LPGWCVEEFL DSSSSPHLFL 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 0.0 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150071.1 | 1e-128 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0A0LIV6 | 1e-126 | A0A0A0LIV6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165125.1 | 1e-126 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-50 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.109250.1 |
Entrez Gene | 101207039 |