PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.097890.1 | ||||||||
Common Name | Csa_1G045480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 530aa MW: 57052.1 Da PI: 7.459 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.5e-30 | 181 | 240 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Cucsa.097890.1 181 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGSpTCPVRKQVQRCADDMSILITTYEGNHNHP 240 58**************************888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 167 | 242 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-27 | 174 | 242 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.656 | 176 | 242 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 181 | 241 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 182 | 240 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MGEVREENQR LKQSLTQIMK DYEALKMQFL GIVGRDCKKV QDEDNDVNKE QQQQQHDDDQ 60 IELVSLSLGR FPVSEKKKIV DEKSCMNIIG GDHNEEAACK EALSLGLNCK FEREESMMAV 120 AKEVDSPNSF DHESTKEEAG ETNWPSKGGK TMRSVEDDVT PQNPPKRARV CVRARCETAT 180 MNDGCQWRKY GQKIAKGNPC PRAYYRCTGS PTCPVRKQVQ RCADDMSILI TTYEGNHNHP 240 LPASANAMAS TTSAAASMLL SGSTTSATAA SSSSTASNSL HGLNFYPNNS KPNFYLPNSN 300 SSIISSTSPT HPTITLDLTS NPSSSPSSSS THFGKFTSNF PNSRYPFTGQ LDFGSSRNNV 360 LSWNNGLLSY NRNNHPTTTI TTANNIYQNY IQQQQRNPTT SLQHQQPPLP DTIAAATKAI 420 TADPSFQSAL AAALTSIIGT GGASASAGLT KSSSGRGEQS LFQLMTTAAT TNKGNGCGTS 480 FLNNITTTTT TTSNSPPTGN MVFVPTNSLP FSNSKSASAS PGDHIDLTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 168 | 242 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152535.1 | 0.0 | PREDICTED: probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-106 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A0A0LQQ6 | 0.0 | A0A0A0LQQ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165456.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 7e-55 | WRKY DNA-binding protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.097890.1 |
Publications ? help Back to Top | |||
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