PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.065480.1 | ||||||||
Common Name | Csa_4G290850, LOC101205501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 416aa MW: 47200.9 Da PI: 7.1585 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.1 | 4.2e-22 | 94 | 188 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ ++g kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ d++ Cucsa.065480.1 94 KWTDEIVRLLIAVVACVGDDGEAGMgskrksgilHKKGKWKTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLNDILGKGtSCRVVENPALMDSM 188 7**************88888887533456678889*********************************************669999999888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-19 | 92 | 215 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMNNFE GKAIASGCIT 60 NNYTSEEDEP SYTEDGECSE FLKGKKGSPW QRMKWTDEIV RLLIAVVACV GDDGEAGMGS 120 KRKSGILHKK GKWKTVSKIM QSKGCHVSPQ QCEDKFNDLN KRYKRLNDIL GKGTSCRVVE 180 NPALMDSMPH LSSKAKDDVR KILSSKHLFY KEMCAYHNGQ TIPGCQDVDF QGKILPVANF 240 SKGNNESEDS DSDSDSGESD NEDDHSPVEN RLWSSESRGR DKVSADDGPL WSNSVGKNEF 300 EGQIDVFLSD PTKSHWERKV WIKKQMLQLQ EQCNSFQAQS VELEKQRFKW LRYCSKKNRD 360 LERARLENER MKLDNEQRVL QLKRKEMELE LKRSDLAVGP LLAIDRIQGR EQLDLX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 0.0 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142119.1 | 0.0 | PREDICTED: uncharacterized protein LOC101205501 | ||||
TrEMBL | A0A0A0KX12 | 0.0 | A0A0A0KX12_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161693.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-84 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.065480.1 |
Entrez Gene | 101205501 |
Publications ? help Back to Top | |||
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