PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.065480.1
Common NameCsa_4G290850, LOC101205501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 416aa    MW: 47200.9 Da    PI: 7.1585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.065480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.2e-2294188185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt++ v++Li+++  ++++ ++g           kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ d++
  Cucsa.065480.1  94 KWTDEIVRLLIAVVACVGDDGEAGMgskrksgilHKKGKWKTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLNDILGKGtSCRVVENPALMDSM 188
                     7**************88888887533456678889*********************************************669999999888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1992215No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDSSGLGGGF LSGNGGLLDL ESPIRRPQKT QLVNPSLTQR HQLNMMNNFE GKAIASGCIT  60
NNYTSEEDEP SYTEDGECSE FLKGKKGSPW QRMKWTDEIV RLLIAVVACV GDDGEAGMGS  120
KRKSGILHKK GKWKTVSKIM QSKGCHVSPQ QCEDKFNDLN KRYKRLNDIL GKGTSCRVVE  180
NPALMDSMPH LSSKAKDDVR KILSSKHLFY KEMCAYHNGQ TIPGCQDVDF QGKILPVANF  240
SKGNNESEDS DSDSDSGESD NEDDHSPVEN RLWSSESRGR DKVSADDGPL WSNSVGKNEF  300
EGQIDVFLSD PTKSHWERKV WIKKQMLQLQ EQCNSFQAQS VELEKQRFKW LRYCSKKNRD  360
LERARLENER MKLDNEQRVL QLKRKEMELE LKRSDLAVGP LLAIDRIQGR EQLDLX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142119.10.0PREDICTED: uncharacterized protein LOC101205501
TrEMBLA0A0A0KX120.0A0A0A0KX12_CUCSA; Uncharacterized protein
STRINGXP_004161693.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-84sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]