PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.061660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 311aa MW: 34720.6 Da PI: 9.0884 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 83 | 127 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ Cucsa.061660.1 83 RGNFTEDEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 127 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.054 | 64 | 77 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 64 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.65E-22 | 64 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.908 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-17 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 83 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.42E-13 | 85 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 91 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MKTNASSITF ASMVKAVGVL SLRLLVCISS KQKLNFLSFF LSFSDLINLI SILSFSIYIL 60 GLLRCGKSCR LRWINYLRPD LKRGNFTEDE DELIIKLHSL LGNKWSVIAG RLPGRTDNEI 120 KNYWNTHIKR KLITRGIDPQ THRPLNEPPT TAAALSPRLP YQNHHHHHRR HHHHLTPNDH 180 SSSSSSSLPN IAELPIMKAA TNVQSSDPDE EGSGTTTEMD PPLPAAEPTL GVHVKTEVNL 240 ELSIGLHPFQ AEAVRGSSLG SSAESRLREE RRALVRCLCW ELGWEKGGEC NRNCERTYGW 300 FRASAMGSTS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 64 | 134 | 40 | 110 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141649.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q38851 | 5e-57 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A0A0KXZ4 | 0.0 | A0A0A0KXZ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141649.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004162864.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 8e-55 | myb domain protein 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.061660.1 |