PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.053890.1 | ||||||||
Common Name | Csa_3G560210, LOC101216980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 27551.3 Da PI: 9.6415 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.7 | 2e-31 | 16 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptd+elv++yLk+kv + +l++ ++i++vdi+ ++Pw Lp + +++ +fFsk+++ +r++ g+Wk+ gk+k +ls+ Cucsa.053890.1 16 LPVGYRFCPTDQELVSHYLKRKVFHLPLPA-SIIPDVDIFLTDPWALPGDL---KEKRFFFSKQKSF------FRRSAGCGIWKSIGKEKLILSQ 100 799***************************.89***************544...3567899887664......6899999**************9 PP NAM 96 ..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++lvg +ktLvf + ++++ t+Wvmheyrl Cucsa.053890.1 101 epMNQLVGFRKTLVFSESkFCERTSATRWVMHEYRL 136 887889**********7625677889********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-38 | 11 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.762 | 16 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 17 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDNISTFVLN GGSIRLPVGY RFCPTDQELV SHYLKRKVFH LPLPASIIPD VDIFLTDPWA 60 LPGDLKEKRF FFSKQKSFFR RSAGCGIWKS IGKEKLILSQ EPMNQLVGFR KTLVFSESKF 120 CERTSATRWV MHEYRLPPSA SPTTPNSTQQ IEMGDWAVYS LFQKRRRPKR QGVEEKQRLS 180 VAKEASVLDL RVEDGWEFPQ PSSSSSSGVT EVSSNATDQE ESSSSLGLGL GFSSYFSQAH 240 VRGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-25 | 12 | 165 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 169 | QKRRRPKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681857 | 1e-115 | LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023. | |||
GenBank | LN713260 | 1e-115 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651545.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like isoform X1 | ||||
TrEMBL | A0A0A0LDI3 | 1e-147 | A0A0A0LDI3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148002.1 | 1e-147 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-31 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.053890.1 |
Entrez Gene | 101216980 |
Publications ? help Back to Top | |||
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