PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.044390.1 | ||||||||
Common Name | Csa_6G510280, LOC101215173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 263aa MW: 28811.4 Da PI: 9.5703 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.8e-34 | 19 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Cucsa.044390.1 19 KQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.699 | 16 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-32 | 18 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 18 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-26 | 19 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-9 | 21 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-24 | 105 | 151 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDPTNGNNAT SKSPNLASKQ RLRWTHDLHE RFVNAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKKTDKK DSSDILSNID GSSGMQITEA LKLQMEVQKR 120 LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ KLSGVLSGAP AASAFTAPAS GDNCPEVDKN 180 DPSTPASTSE FPRQEKVSKE RAQGKSVSID DSFSSHHEPL TPDSGCHSSP SESPRPVKKQ 240 IQSKMILAHQ ILESSLNSTH KE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-23 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-23 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-23 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-23 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 19 | 76 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU284118 | 0.0 | EU284118.1 Cucumis sativus putative myb family transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658093.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
Swissprot | Q9SJW0 | 1e-116 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | B3FNK5 | 0.0 | B3FNK5_CUCSA; Putative myb family transcription factor | ||||
STRING | XP_004134996.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-88 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.044390.1 |
Entrez Gene | 101215173 |
Publications ? help Back to Top | |||
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