PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.002980.1
Common NameCsa_4G193250, LOC101206465
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 325aa    MW: 36579.4 Da    PI: 7.5288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.002980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.52.1e-5661331129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee+v++yL++k+ +  +++  +i e+d++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkd+e+++ 
  Cucsa.002980.1   6 LPPGFRFHPTDEEIVTYYLAQKIIDAAFNA-AAIGEADLNKCEPWDLPQKAKMGEKEWYFFCQRDRKYPTGMRTNRATQTGYWKATGKDREIYKG 99 
                     79*************************999.78***************99999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     k+ l g+kktLvfykgrapkgekt+Wvmhe+rle
  Cucsa.002980.1 100 KSVLAGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 133
                     9999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-623159IPR003441NAC domain
PROSITE profilePS5100558.7026158IPR003441NAC domain
PfamPF023655.9E-297132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTTVNLPPGF RFHPTDEEIV TYYLAQKIID AAFNAAAIGE ADLNKCEPWD LPQKAKMGEK  60
EWYFFCQRDR KYPTGMRTNR ATQTGYWKAT GKDREIYKGK SVLAGMKKTL VFYKGRAPKG  120
EKTNWVMHEF RLEPKFAHFL RLPRPVKDDW VVCRVFHKNP TMAATTPIRR IQTTSDLSSS  180
LPPLIDPPAT TLIPINSGGF DDFEVKCRPS GQSDYRFKYI STDTTNDRHH YHQPAATLPL  240
PAATTTAATT MNNVSYAPSV PDDGFFSFDQ LAAVGGTMPL TTPPTMECKM EQTSWSMMSG  300
VTQDASSSID NSGYDLDVWD YYEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-52116112168NO APICAL MERISTEM PROTEIN
1ut4_B4e-52116112168NO APICAL MERISTEM PROTEIN
1ut7_A4e-52116112168NO APICAL MERISTEM PROTEIN
1ut7_B4e-52116112168NO APICAL MERISTEM PROTEIN
3swm_A4e-52116115171NAC domain-containing protein 19
3swm_B4e-52116115171NAC domain-containing protein 19
3swm_C4e-52116115171NAC domain-containing protein 19
3swm_D4e-52116115171NAC domain-containing protein 19
3swp_A4e-52116115171NAC domain-containing protein 19
3swp_B4e-52116115171NAC domain-containing protein 19
3swp_C4e-52116115171NAC domain-containing protein 19
3swp_D4e-52116115171NAC domain-containing protein 19
4dul_A4e-52116112168NAC domain-containing protein 19
4dul_B4e-52116112168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147553.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FK441e-95NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0A0KWG90.0A0A0A0KWG9_CUCSA; Uncharacterized protein
STRINGXP_004147553.10.0(Cucumis sativus)
STRINGXP_004157037.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.28e-95Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]