PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g026100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 771aa MW: 85510.8 Da PI: 7.2946 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 506 | 528 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C +f rtG+Ck+G+ C+++H+ Csa20g026100.1 506 EECAYFIRTGHCKFGSACRYHHP 528 89********************9 PP | |||||||
2 | zf-CCCH | 40.7 | 4.1e-13 | 625 | 650 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++CkF+H++ Csa20g026100.1 625 EQPECQYFMRTGNCKFGSSCKFHHPM 650 5799********************95 PP | |||||||
3 | zf-CCCH | 35.3 | 1.9e-11 | 664 | 690 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C++fa+ G+Ck+G+ CkF H++ Csa20g026100.1 664 PGVAPCSHFAKHGICKFGPACKFDHSM 690 5789*********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.80.10.10 | 9.0E-23 | 4 | 238 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 1.04E-22 | 5 | 251 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50103 | 13.929 | 502 | 530 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 503 | 529 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 503 | 530 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 505 | 528 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.976 | 623 | 651 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-7 | 623 | 650 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 624 | 651 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 626 | 650 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 629 | 648 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 663 | 691 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 663 | 690 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 665 | 689 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 666 | 691 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 668 | 690 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MPYSQLHKLG ARIKDLKMLK RLILCHSLQL VECDILIYAQ NIELIDLQGC TGLQRFPDTS 60 QLQNLRVVNL SGCTGIQSFS GVPPNIEELH LQGTHIREIP ISNATLSPKV KLDRKKLLNL 120 LENFSDVEHI DLECVTNLAK VTSYNQGMSK LVCLNMKYCS HLRSLPDMVS LESLEVLYLS 180 GCSELEEIKD FPRNLRKLYL GGTAIVELPQ LPKSLEFLNA HGCKHLKSIN LNFEQLPRHF 240 IFSNCFKLSS QVNAKLLEKG LVPSLARAKE EELIKAPEAI ICIPIDARQR SSFRLQAGPN 300 AMQDLRPWMR KPISGFGMSV VVSFQDDYHN DVGLRIRCVA TWKTRNNRPD RIIQRYFQCW 360 APTEAPKVEE DHIFVFYDTK LHPSDGEENH INLWAHEVKF EFHTVSGENN PLGASCKVTE 420 CGVEVITAPS GDTINIIEEE DTQPRKSVET INIIEEEDTL PTKPEETINI IEEEDTLPTK 480 PEETNRSLSS SEPQNIFSMP SKGEKEECAY FIRTGHCKFG SACRYHHPVS PAVQAPSVPP 540 TQQYGVVLPR PQLLPGSYVP SPYVYGPMVL RPGMAPFSGW NPHPPSMGTS SVYGIPSLSP 600 VAAFRSYPSS TDISNKEQTF PQRPEQPECQ YFMRTGNCKF GSSCKFHHPM KAASPKAIGL 660 PLRPGVAPCS HFAKHGICKF GPACKFDHSM GSSSLRHNPS TSSLTDMPVA PYPTGSSPLG 720 KLAPSSYSSD QRTEILSSSS IKAITTTGGS ETVGSGAVAD SVWGAKKFYN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | NB-LRR receptor-like protein that modulates growth, cell death and freezing tolerance in a temperature-dependent manner. May be involved in defense responses. {ECO:0000269|PubMed:20444230}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g026100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY079160 | 0.0 | AY079160.1 Arabidopsis thaliana AT5g17890/MPI7_30 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420518.1 | 0.0 | PREDICTED: protein DA1-related 4 | ||||
Swissprot | Q9FKN7 | 0.0 | DAR4_ARATH; Protein DA1-related 4 | ||||
TrEMBL | V4N7Y4 | 0.0 | V4N7Y4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010420518.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2506 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.1 | 1e-113 | Disease resistance protein (TIR-NBS-LRR class) |
Publications ? help Back to Top | |||
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