PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g048440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 342aa    MW: 37797.1 Da    PI: 7.7761
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g048440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.6e-1483133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++kGVr ++ +g W AeI+dp   + + r +lg+f ta++Aa a+  a+ +l g
  Csa19g048440.1  83 KKIKGVRKKP-SGTWSAEIWDP---NLKVRRWLGTFPTADMAAHAYNDAAAELVG 133
                     589****999.7*********9...335999*******************99976 PP
2AP230.96.7e-10249316255
             AP2   2 gykGVrwdkkrgr..................WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++kGVr ++ +g+                  W AeI+dp   + + r +lg+f ta++Aa a+  a+ +l g
  Csa19g048440.1 249 KIKGVRKKP-SGKpalrifilctficipsgtWSAEIWDP---NLKVRRWLGTFPTADMAAHAYNDAAAELVG 316
                     566666555.466666666666666666666*******9...335999*******************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.16E-1483119No hitNo description
PROSITE profilePS5103217.97884141IPR001471AP2/ERF domain
PfamPF008471.4E-684133IPR001471AP2/ERF domain
SMARTSM003801.7E-1984148IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1384135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-1886135IPR001471AP2/ERF domain
CDDcd000182.10E-11248302No hitNo description
PROSITE profilePS5103216.133249324IPR001471AP2/ERF domain
SMARTSM003802.4E-14249332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15251318IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-10275318IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDPADVPSYD RDDNFIPYVT RDEEHVIMVS ALRQVISNFE GDTSTCESRL PSLNAGPCPL  60
CGITGCNGCV FPRHEDTMEK KEKKIKGVRK KPSGTWSAEI WDPNLKVRRW LGTFPTADMA  120
AHAYNDAAAE LVGQRPAARG PTTCLPGIYK SLCFQIIIQH PHNKKMDPAD VPSYDRDDNF  180
IPYVTRDEEH VIMVSALRQV ISNFEGDTST CESRLPSLNA GPCPLCGITG CNGCVFPRHE  240
DTMEKKEKKI KGVRKKPSGK PALRIFILCT FICIPSGTWS AEIWDPNLKV RRWLGTFPTA  300
DMAAHAYNDA AAELVGQRPA ARGATQKGEK ASTKNMRVEN D*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g048440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489052.11e-100PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_010489053.11e-100PREDICTED: ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK675e-59EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLD7L2W03e-60D7L2W0_ARALL; Uncharacterized protein
STRINGXP_010489052.13e-99(Camelina sativa)
STRINGXP_010489053.13e-99(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.12e-50ERF family protein