PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g030900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 14455.2 Da PI: 8.7339 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.7 | 7.6e-28 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca C +++++C+++C +apyfpae++ +++n+h+lFG+ n++k+++ +p++e + +++ss+++e++a+ +d +G ++ i+kl++++ k l Csa19g030900.1 12 PCALCTTKNKTCSQNCEFAPYFPAEKKLEYKNAHELFGTPNIMKMMRFAPTTEeKCMLASSILMEGKAWKDDHAKGGFEKIRKLKWEILLRKLYL 106 7************************************************87775999********************************999999 PP DUF260 95 allkee 100 ++lke+ Csa19g030900.1 107 NELKEK 112 999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.259 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-23 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MDVQIINVIR EPCALCTTKN KTCSQNCEFA PYFPAEKKLE YKNAHELFGT PNIMKMMRFA 60 PTTEEKCMLA SSILMEGKAW KDDHAKGGFE KIRKLKWEIL LRKLYLNELK EKIKVVEEEI 120 KLAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g030900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010490008.1 | 1e-86 | PREDICTED: LOB domain-containing protein 9-like | ||||
Swissprot | O82198 | 5e-51 | LBD9_ARATH; LOB domain-containing protein 9 | ||||
TrEMBL | R0GAA1 | 4e-49 | R0GAA1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010490007.1 | 2e-86 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 7e-53 | LOB domain-containing protein 9 |