PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g015330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 315aa    MW: 35504.9 Da    PI: 8.0967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g015330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-0881128247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE + + +a + +  +   +W ++a++++ g+t  ++ + + k+
   Csa19g015330.1  81 SNWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVLDVMNQYSKL 128
                      58*****************99*************.*********99876 PP
2Myb_DNA-binding39.51.3e-12179223347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   Csa19g015330.1 179 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 223
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.82778131IPR017884SANT domain
SMARTSM007174.1E-979131IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-1181135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-481127IPR009057Homeodomain-like
PfamPF002499.7E-782127IPR001005SANT/Myb domain
CDDcd001674.33E-882128No hitNo description
PROSITE profilePS5129419.439172228IPR017930Myb domain
SuperFamilySSF466893.37E-15174227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17175227IPR006447Myb domain, plants
SMARTSM007171.7E-10176226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-11176228IPR009057Homeodomain-like
PfamPF002495.6E-10179223IPR001005SANT/Myb domain
CDDcd001679.07E-9179223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
KTFYLFLIYL TNQSFFKLSL TKQEIWTFLS CVCSWKTYSS SLFFFVAMET LHPLSHLPIS  60
DHRFVVQEMM SLHSSSSSSS SNWTKEENKM FERALAIYAE DSPDRWFKVA SMIPGKTVLD  120
VMNQYSKLEE DVSDIEAGRV PIPGYPAASS SPLAFDPDTC RKRPNGARGS DHDRKKGVPW  180
TEEEHRRFLL GLLKYGKGDW RNISRNFVVS KTPTQVASHA QKYYQRQLSG AKDKRRPSIH  240
DITTVNLLNA NLNRSFSDHS DILPDLGFTD KDNAEDGVIF MGQNLSSETL FSPSPTSFDA  300
AFSYAGANAF SARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1674145273RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g015330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486776.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7L9W11e-175D7L9W1_ARALL; Myb family transcription factor
STRINGXP_010486776.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-170MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]