PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g007040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 584aa    MW: 64367.2 Da    PI: 5.3368
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g007040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.51.7e-15403441240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+C+C+kskClk+YC+Cfaag +C e C+C+dC+Nk 
  Csa19g007040.1 403 SCKRCKCRKSKCLKLYCDCFAAGLYCVEPCSCQDCFNKP 441
                     589**********************************96 PP
2TCR52.51e-16489528241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +++gCnC+ks Clk+YCeCf  g+ Cs++C+C +CkN+ +
  Csa19g007040.1 489 HTRGCNCRKSGCLKRYCECFMMGVGCSSSCRCMGCKNNIS 528
                     889**********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-16402443IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.447403528IPR005172CRC domain
PfamPF036387.8E-11405440IPR005172CRC domain
SMARTSM011141.8E-18488529IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12491526IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDTPDKNRIS AVSFRNFEDS PVFQYINDLS PIEPVKPARP EHISHSLVFW KSVKITGLSE  60
EQLPNVSESK PFQEQISLAI ELANSLKHGR DGVDVQMVSS DEEPMDADIE IGRSGGSREL  120
SDELCIQSND PIDFDADSEV VLQTEEMEAH SVFGTEKIMF DVAGSQNSEQ QIPKVTDPIS  180
DSFASEPQKI SICCNNSANV VEPGGYYSVQ VAAGAPGITL SSSSKVATID STAEAEGKED  240
RGLQPCRKQR GVRRRCLTFD VGGSHKRIPL RDSTNDLPLD LTSISKAPSP QECLDTSKQD  300
TVGILPLPLT IGLHLNGLVN PSVSSDRNKK SFKDGRFFPP GPTTFHHNIE DEFSTPVSTK  360
RDLVYSDIKF MESPEISLEG ECFDQHMATE YRQLFQGLDE LGSCKRCKCR KSKCLKLYCD  420
CFAAGLYCVE PCSCQDCFNK PIHEDLVMKT REVIEARNPL AFAPKVVSTS NSAINLWDEN  480
SKTPASARHT RGCNCRKSGC LKRYCECFMM GVGCSSSCRC MGCKNNISHT NEKCARQSDA  540
ATINDEAKDN DDHGDASSQN EGTSKRERRK RVLLPSSVAF RSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1840552512120Protein lin-54 homolog
5fd3_B4e-1840552512120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g007040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485870.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A178VLW70.0A0A178VLW7_ARATH; Uncharacterized protein
STRINGXP_010485870.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein