PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g005130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 467aa    MW: 51489.4 Da    PI: 4.7653
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g005130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35201112102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ +++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ l++
  Csa19g005130.1  20 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQILKS 105
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  Csa19g005130.1 106 IVRRKP 111
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5716109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGSICESVPT AVTGGSIPPF LSKTYDMVDD PLTDDVVSWS SGNNSFVVWN VPEFAKQFLP  60
KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK QILKSIVRRK PAQVQPQQQP  120
QVQHSSVGAC VEVGKFGLEE EVDRLQRDKN VLMQELVRLR QQQQVTEHHL QNVGQKVHVM  180
EQKQQQMMSF LAKAVQSPGF LNQFSQQSNE ANQHISESNK KRRLPVEDQK NSGCHGVNGL  240
LSRQIVRYQS SMNDAANTML QQIQQMSNSP SHESLSSNHG SFLLGDVPSS NISDNGSSSN  300
GSSGVTLADV SSNPAASLYP AMKYHDPCET NQVLETTLPY SQGDLLAPTQ GAAASGSSNL  360
DFVGCEIDNG ECLDPIMAVL DGPIELEAGV INELLPEVQD SFWGQFLGET PVIGDTDELI  420
SGSVDNELIM EHLELQSSLS NGWSKNQQMN HLTEQMGLLT SDALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26910918129Heat shock factor protein 1
5d5v_B1e-26910918129Heat shock factor protein 1
5d5v_D1e-26910918129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g005130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485631.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_010485633.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLR0HYA00.0R0HYA0_9BRAS; Uncharacterized protein
STRINGXP_010485631.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]