PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g034810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 291aa    MW: 32544.4 Da    PI: 7.7864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g034810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-051132223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C+ksFs+   L  H+++H
  Csa18g034810.1 11 TCQVCKKSFSNGKALGGHMKSH 32
                    6*******************99 PP

2zf-C2H211.60.00084254276123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+++F +   L  H + H
  Csa18g034810.1 254 YECQICNRVFESGQALGGHKKIH 276
                     99**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3251037IPR007087Zinc finger, C2H2
SMARTSM003550.141032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139121.6E-91234IPR007087Zinc finger, C2H2
SMARTSM003550.16213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783213240IPR007087Zinc finger, C2H2
PfamPF139123.2E-9213236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-7213276No hitNo description
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
PfamPF139121.4E-11253276IPR007087Zinc finger, C2H2
SMARTSM003550.032254276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367254276IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMNSLLNQKK TCQVCKKSFS NGKALGGHMK SHRKLSPESS TSSITSSLRP RINLGANIRT  60
HETVLMRSVV HTNEVVGGQT PDLNKEGEQQ VTTLKKKLVL DLDKENSTES PALCLLQMKD  120
MWSKSCQNPK STDSLISTRK GKDIEIDSEE DIEDSDDEYV VEDEDNKDGD ALKFLTSDVG  180
YLTADSDEND DNYGDENAHY GTKERKGKKQ SKYRCDICGK ILRSYQALGG HRTSHSNKKL  240
KISDQDAPAV RRHYECQICN RVFESGQALG GHKKIHYMFL QPFNFSTSAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g034810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483817.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLR0G7H61e-125R0G7H6_9BRAS; Uncharacterized protein
STRINGXP_010483817.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.14e-79C2H2-like zinc finger protein