PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g034810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 291aa MW: 32544.4 Da PI: 7.7864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 11 | 32 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksFs+ L H+++H Csa18g034810.1 11 TCQVCKKSFSNGKALGGHMKSH 32 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 254 | 276 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H + H Csa18g034810.1 254 YECQICNRVFESGQALGGHKKIH 276 99**********99999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.325 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-9 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.2E-9 | 213 | 236 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.2E-7 | 213 | 276 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-11 | 253 | 276 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.032 | 254 | 276 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 254 | 276 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 256 | 276 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MMNSLLNQKK TCQVCKKSFS NGKALGGHMK SHRKLSPESS TSSITSSLRP RINLGANIRT 60 HETVLMRSVV HTNEVVGGQT PDLNKEGEQQ VTTLKKKLVL DLDKENSTES PALCLLQMKD 120 MWSKSCQNPK STDSLISTRK GKDIEIDSEE DIEDSDDEYV VEDEDNKDGD ALKFLTSDVG 180 YLTADSDEND DNYGDENAHY GTKERKGKKQ SKYRCDICGK ILRSYQALGG HRTSHSNKKL 240 KISDQDAPAV RRHYECQICN RVFESGQALG GHKKIHYMFL QPFNFSTSAK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g034810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483817.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | R0G7H6 | 1e-125 | R0G7H6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010483817.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 4e-79 | C2H2-like zinc finger protein |