PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g031800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 611aa    MW: 66892.1 Da    PI: 5.703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g031800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08252272526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  Csa18g031800.1 252 PCPEFRK-GSCSRGDTCEYAHG 272
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.64E-1310165IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-923123IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0195787IPR002110Ankyrin repeat
PROSITE profilePS5029713.68157132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-1358132IPR020683Ankyrin repeat-containing domain
CDDcd002048.62E-1359132No hitNo description
SMARTSM002480.005792124IPR002110Ankyrin repeat
PROSITE profilePS500889.77892127IPR002110Ankyrin repeat
SMARTSM003564.9E-5247273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4251274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263252274IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6252272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4280310IPR000571Zinc finger, CCCH-type
SMARTSM0035620282305IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221282306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MGDDELSHLK FSLLLESSAC NDLSVFKSLV EEEGLESIDR SGLWYGRRLG SKKMGFEERS  60
PLMIAALFGS KDIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSVNSLE VVTLLLKGSA  120
DPDSCDAYGN KPGDVIFPCL SPVFGARKKV LERLLKGNDD LNEVNVQEEG AREVEVEVSP  180
PRGSERKEYP VDPTLPDIKN GIYGTDEFRM YAFKIKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKYHYSC VPCPEFRKGS CSRGDTCEYA HGIFECWLHP AQYRTRLCKD ETNCSRRVCF  300
FAHKPEELRP LYPSTGSGVP SPRSSFSSCN SSSAYDMAPI SPLPLGASAT PPLSPNGVSS  360
PMGGGKTWMN WPTITPPALQ LPGSRLKSAL NAREIDFSEE IQSLSSPNRW NNNTPMSAAS  420
SPFSGKGMNM LAGGAMSPVN SLTDMFGTED NRTSGLQIRR SIINPQLHPN SLSSSPVGAN  480
SLFSINSSTV LASRAAEFAK QRSQSFTERN NGLNHHPAIS SMTSTCLNDW ASLDGKLDWS  540
VQGDELQKLR NSTSFRLRAG GMEPRLPNEG TGLEEPDVSW VEPLVKEPQE TRLAPVWMEQ  600
SYMETEQTVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g031800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483463.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLR0GPL20.0R0GPL2_9BRAS; Uncharacterized protein
STRINGXP_010483463.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein