PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g028890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 438aa MW: 48086.9 Da PI: 5.1299 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+Fs+ L H r H Csa18g028890.1 22 HVCCECGKRFSSGKALGGHKRIH 44 79*****************9998 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00093 | 281 | 303 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksFs+ L H +H Csa18g028890.1 281 HVCVTCNKSFSSYQALGGHRASH 303 79***********9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 19 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.65E-7 | 20 | 92 | No hit | No description |
Pfam | PF13912 | 3.3E-7 | 21 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 22 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.8 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-4 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.55E-8 | 280 | 303 | No hit | No description |
Pfam | PF13912 | 2.5E-10 | 281 | 305 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 281 | 308 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 281 | 303 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.55E-8 | 345 | 372 | No hit | No description |
Pfam | PF13912 | 3.6E-13 | 350 | 373 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 350 | 372 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 350 | 372 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 352 | 372 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MDLEEGGVEE EEEEDEEKKK HHVCCECGKR FSSGKALGGH KRIHAQYSVV QRPKMVSGMV 60 GRSERGELEV ACCVCYKKFT SMKALYGHMR HHPDRGWKGV LPPPPPLPHP LGNSSSSTLS 120 IDDHDDEFIS SDYDDDDDDF DDDDDENSEL WDNNLESENV VDVKESFKGW STKGKRGRRS 180 DLKVDESDLK DQPQEDMNDA NNLLFLATTA EEAANLNVAE TYNSHSVEEK DLEMVKKRKK 240 KKKSLSEMEK ESSSTHHDHH QLEVVAAAEK GGAAAGVREK HVCVTCNKSF SSYQALGGHR 300 ASHNKVKISE NHLARANAEA SLLGIEAIVT GLASAQGSNT SISSSNNGDH ICNICHKSFP 360 TGQALGGHKR CHWTGPVSTE APTAAPTAAP TTAPAEASSS QAQATEIVQE VKKLKRTFLE 420 FDLNELPPNE DEEEERV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 239 | KKRKK |
2 | 236 | 242 | KRKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g028890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483090.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | R0EWN0 | 0.0 | R0EWN0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010483090.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-115 | C2H2 family protein |