PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g028890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 438aa    MW: 48086.9 Da    PI: 5.1299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g028890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000462244123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  Cgk+Fs+   L  H r H
  Csa18g028890.1 22 HVCCECGKRFSSGKALGGHKRIH 44
                    79*****************9998 PP

2zf-C2H211.50.00093281303123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksFs+   L  H  +H
  Csa18g028890.1 281 HVCVTCNKSFSSYQALGGHRASH 303
                     79***********9999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-41944IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.65E-72092No hitNo description
PfamPF139123.3E-72144IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.722245IPR007087Zinc finger, C2H2
SMARTSM003550.152244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003555.87092IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-47294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576678.55E-8280303No hitNo description
PfamPF139122.5E-10281305IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577281308IPR007087Zinc finger, C2H2
SMARTSM003550.38281303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
SuperFamilySSF576678.55E-8345372No hitNo description
PfamPF139123.6E-13350373IPR007087Zinc finger, C2H2
SMARTSM003550.23350372IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974350372IPR007087Zinc finger, C2H2
PROSITE patternPS000280352372IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDLEEGGVEE EEEEDEEKKK HHVCCECGKR FSSGKALGGH KRIHAQYSVV QRPKMVSGMV  60
GRSERGELEV ACCVCYKKFT SMKALYGHMR HHPDRGWKGV LPPPPPLPHP LGNSSSSTLS  120
IDDHDDEFIS SDYDDDDDDF DDDDDENSEL WDNNLESENV VDVKESFKGW STKGKRGRRS  180
DLKVDESDLK DQPQEDMNDA NNLLFLATTA EEAANLNVAE TYNSHSVEEK DLEMVKKRKK  240
KKKSLSEMEK ESSSTHHDHH QLEVVAAAEK GGAAAGVREK HVCVTCNKSF SSYQALGGHR  300
ASHNKVKISE NHLARANAEA SLLGIEAIVT GLASAQGSNT SISSSNNGDH ICNICHKSFP  360
TGQALGGHKR CHWTGPVSTE APTAAPTAAP TTAPAEASSS QAQATEIVQE VKKLKRTFLE  420
FDLNELPPNE DEEEERV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239KKRKK
2236242KRKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g028890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483090.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLR0EWN00.0R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010483090.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-115C2H2 family protein