PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g026620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 290aa    MW: 32088 Da    PI: 9.9476
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g026620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.7e-32173229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RR++R kle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Csa18g026620.1 173 NEPIFVNAKQYHAILRRRKHRSKLEAQNKL-IKCRKPYLHESRHLHALKRARGSGGRF 229
                     59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-35171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.004172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-26174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22175197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQVFHQRKDS SWGNSMPTNS NIQGSESFTL TKDMMMSTTQ FPGIKHSSLQ LQDQDSSSTQ  60
STGESGGGGG GEVASFEERN RYGCSTVTSE TRESLLKDIL SQLPHLVYGF SRFCVSSSYL  120
WSNTLVSLQC AETSHFNGFL PHEYASTPTV LPHLEMMGLV SSRVSLPHNV QENEPIFVNA  180
KQYHAILRRR KHRSKLEAQN KLIKCRKPYL HESRHLHALK RARGSGGRFL NTKKLQESSN  240
SLCSSQMANV QNFSKSPRGG GSGIGSSSIT PSSSLNRINT PCLSSHVRDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-19174234363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g026620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869570.0AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds.
GenBankAY0814450.0AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443135.11e-147PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-5-like
RefseqXP_010462321.11e-147PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_010462322.11e-147PREDICTED: nuclear transcription factor Y subunit A-5-like
RefseqXP_010462323.11e-147PREDICTED: nuclear transcription factor Y subunit A-5-like
SwissprotQ9SYH41e-127NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBLR0IIT31e-129R0IIT3_9BRAS; Uncharacterized protein
STRINGXP_010443135.11e-146(Camelina sativa)
STRINGXP_010462321.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116331733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-113nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gao W,Liu W,Zhao M,Li WX
    NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis.
    Nucleic Acids Res., 2015. 43(1): p. 607-17
    [PMID:25514924]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  5. Du Q,Zhao M,Gao W,Sun S,Li WX
    microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis.
    Plant J., 2017. 91(1): p. 22-33
    [PMID:28332758]
  6. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]