PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g089980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 38956.1 Da PI: 6.4978 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 177 | 196 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Csa17g089980.1 177 FSCPLCFKTFNRYNNMQMHM 196 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 261 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Csa17g089980.1 261 FACRRCGKAFAVKGDWRTHEKNC 283 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 177 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 177 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-6 | 247 | 281 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 248 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 261 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MSNPACSNLL DNGCDHNNIN YSTSLSYIYN SQGSFYYPNT INPSYTNPTP TTSTFPSSPP 60 LREALPLLSL SPIRHQEQQD RAYFMDTDQI SSSIFLDDPH VTVDLHLGLP NYGVGESIGS 120 YIASDATTEE QEQDHDQGVE VTVESHLHDD DDHGDLHRGH HYWIPTPSQI LIGPTQFSCP 180 LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCFCCAPGC KNNIDHPRAK 240 PLKDFRTLQT HYKRKHGSRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS 300 LKDHVKAFGN GHVPIGIDSF GGDLEDYYEA ASDIEQQDDS NNNEC* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g089980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481105.1 | 0.0 | PREDICTED: zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | R0IQE2 | 0.0 | R0IQE2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010481105.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|